Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6 140 2e-28 seq1 127 1e-24 >seq6 Length=2129081 Score = 140 bits (154), Expect = 2e-28 Identities = 159/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 44128 CACC-AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 |||| || ||||| || |||||| |||||||| || || | || ||| |||| | Sbjct 299645 CACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCT 299586 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | |||||||| || || ||||||||||||||||| || | || | || ||||| ||| Sbjct 299585 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCT 299526 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| | | |||||||| | || |||||||| | || ||||||| Sbjct 299525 GAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCT 299466 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || |||||||||||||||||||| |||||| Sbjct 299465 TCCCAGTGAGGGTCTTCACGAAGATCTGCATG 299434 Score = 136 bits (150), Expect = 3e-27 Identities = 160/213 (75%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 ||||| ||||||| ||||||||||| ||||| ||||| || | || ||| |||| | Sbjct 300716 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 300657 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | |||||||| || || || || | |||||||| || | ||| | |||||||| ||| Sbjct 300656 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 300597 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 |||||| ||| || ||| | || ||||| | || || ||||||| ||| || || Sbjct 300596 GAATCTTCGCCTTGACATTGT--CGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGT 300539 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||||||||||||| || ||||| ||||| Sbjct 300538 CTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||| || |||| || ||| |||| || |||||||| || || || Sbjct 300193 CTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAA 300134 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| || | || | || ||||| || |||||| ||||| | Sbjct 300133 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTT 300074 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | || || ||||| | |||||||||||| |||||||||||||| || Sbjct 300073 ATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGAC 300014 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 300013 GAAAATTTGCAT 300002 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||| || || | || ||| |||| || |||||||| || || || Sbjct 299911 CTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 299852 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| || | || | || ||||| ||| ||||| ||| | | Sbjct 299851 GATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 299792 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | || |||||||| | ||| ||||||||||| || | |||||||| Sbjct 299791 ATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCAC 299732 Query 44326 GAAGATTTGCATG 44338 |||||| |||||| Sbjct 299731 GAAGATCTGCATG 299719 >seq1 Length=3320137 Score = 127 bits (140), Expect = 1e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 |||| || || |||||||| || || ||||||||||| | ||| ||| |||| |||| Sbjct 2299117 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2299058 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 ||||| || ||||| |||| || ||||| || | || | |||||||| || | Sbjct 2299057 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2298998 Query 44250 TCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 ||||| ||||| | | || ||||| | || || ||||||| ||| || ||||| | Sbjct 2298997 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2298938 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| |||||||| ||||| Sbjct 2298937 CTGTGAGGGTCTTGACGAAGATCTGCAT 2298910 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||||||||| |||||| ||||||||||| |||| || || | || || Sbjct 2298890 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCG 2298831 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||| || | ||||| ||||| | || | || ||||| ||| Sbjct 2298830 AGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGG 2298771 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| |||| | || | || ||||||| || || ||||||| || || ||||| Sbjct 2298770 ATCTTC-GCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTT 2298712 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| ||||| ||||| Sbjct 2298711 GCCAGTCAGGGTTTTCACAAAGATCTGCAT 2298682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990338576638