Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6 172 5e-38
seq1 138 1e-27
seq8 96.9 3e-15
>seq6
Length=2129081
Score = 172 bits (190), Expect = 5e-38
Identities = 177/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || |||||||| | || ||||||| ||| ||||||||||||||||||||||||
Sbjct 300229 GCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGA 300170
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| |||||||||||||| ||||| |||| |||||| ||||||| |||
Sbjct 300169 AAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGG 300110
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||| | | ||| | || || | ||| | | ||||| ||||| |
Sbjct 300109 AATGCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 300051
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | ||| ||||| || ||||| || ||||| |||||||| |||||
Sbjct 300050 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002
Score = 156 bits (172), Expect = 4e-33
Identities = 162/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714
||| ||| || || ||||||||||||||||||||| || |||||||| |||| ||||
Sbjct 299927 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 299868
Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774
|||||||||| ||||| |||| |||||| ||||| | ||| | || |||||||||| ||
Sbjct 299867 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGG 299809
Query 41775 TTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
| || || | ||| | | ||||| ||||||||||| | ||| ||||| ||
Sbjct 299808 ATCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTT 299749
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| |||| |||||| ||||| |||||||||
Sbjct 299748 CCAGTCAACGTCTTCACGAAGATCTGCATG 299719
Score = 141 bits (156), Expect = 9e-29
Identities = 162/214 (76%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711
|||| ||||| || || ||||||||| ||||||||||| || |||||||| |||| |
Sbjct 299645 CACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCT 299586
Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771
||||||||||||| ||||| |||| ||||| ||||| | ||| | | ||||||||||
Sbjct 299585 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCC- 299527
Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830
||| | || || | ||| | | ||||| ||||||||||| | || |||||
Sbjct 299526 TGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTC 299467
Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864
|| || || || ||||| ||||| ||||||||||
Sbjct 299466 TTCCCAGTGAGGGTCTTCACGAAGATCTGCATGT 299433
Score = 141 bits (156), Expect = 9e-29
Identities = 161/212 (76%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711
||||| | || || |||||||||||||| || || ||||| || |||||||| |||| |
Sbjct 300716 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 300657
Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771
||||||||||||| ||||| || |||||||| ||||| | |||| | |||||||||
Sbjct 300656 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 300598
Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830
||| | || || | || | | | ||||| ||||| ||||||| ||| || ||
Sbjct 300597 TGAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTC 300538
Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || ||||| || || ||||||||
Sbjct 300537 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506
>seq1
Length=3320137
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| ||||| | || || || ||||| ||||||||| ||||| ||||||||
Sbjct 2298908 CCGCCGCGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2298849
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || |||||||||||||| || || || ||||||||||| |||| ||
Sbjct 2298848 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2298789
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||| ||| || | || |||| || | | |||||| |||||| ||
Sbjct 2298788 ATGCCCTCCTTATCC-TGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2298730
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || ||||| || || || || ||||||||
Sbjct 2298729 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2298682
Score = 120 bits (132), Expect = 3e-22
Identities = 157/211 (74%), Gaps = 6/211 (3%)
Strand=Plus/Minus
Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714
||||||| || |||||||| ||||||||||| || || || || ||||| |||| || |
Sbjct 2299117 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2299058
Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774
|||||||| || || |||||||| || ||||||| || | || ||||||| | |||
Sbjct 2299057 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGT-CTTGA 2298999
Query 41775 TTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
| || | ||||| | | || | ||||| ||||| ||||||| ||| || || |
Sbjct 2298998 ATCTTCGCCTTCACATTATCG--ATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCT 2298941
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || || ||||| ||||| ||||||||
Sbjct 2298940 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2298910
Score = 118 bits (130), Expect = 1e-21
Identities = 144/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||| |||||||| || || |||||||| || ||| | || || | |||||| || |||||
Sbjct 2298588 CTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2298529
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|||| || || ||||| | |||| | ||||||||| ||| | || || | |||
Sbjct 2298528 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTTCACGT 2298470
Query 41791 CGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| || |||||| ||||| ||||| | || ||||| || ||||||| |||||||
Sbjct 2298469 TGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTA 2298410
Query 41850 CGAAAATCTGCATG 41863
||||||||||||||
Sbjct 2298409 CGAAAATCTGCATG 2298396
>seq8
Length=1850677
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || |||||| || |||||||| ||| |
Sbjct 435834 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTTTGGATGTTATAATCGCTG 435893
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748
|||||||| |||| ||||||||||| ||||| || ||||||||||| |||||
Sbjct 435894 AGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGGTC 435946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303919096800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |