Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 1e-12 seq9 86.0 1e-11 >seq3 Length=2894765 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||||||||| || | || ||| | ||||||||||| || || || || || | Sbjct 1867526 CTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGATCGTCTG 1867467 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | |||| || ||| ||| || |||||| | | |||||||| | |||||||| Sbjct 1867466 CTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGAC 1867407 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || || | || ||||||||||||||||| || ||||| || Sbjct 1867406 ATGATCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1867363 >seq9 Length=1679134 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCG 282566 || ||||| ||||||| || ||||| | || | || || | ||| |||| | Sbjct 1415437 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGACGTTCGTATACTCTTTGTTG 1415496 Query 282567 GTTTGAAGGCCCAAAAT-TTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTGC 282625 | || ||||||| ||| || ||| | | | ||||||||||||||| |||| || | Sbjct 1415497 CTCTGGAGGCCCATAATCTTCTTTATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTGGT 1415554 Query 282626 CACAGAT-GCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCT 282684 || | || ||||| ||||| |||| |||||||| || || || || ||| | | | Sbjct 1415555 CATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTGT 1415614 Query 282685 CGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCA 282744 |||| ||||| || || || |||| ||||| | | || |||||||| || || | Sbjct 1415615 CGCGCCCGACGACACCCAACCCCGCAACAGCAAGGGCTTTGGCAGAATCTCCTTCAGTGA 1415674 Query 282745 AGATGAGAGTACA 282757 ||||||||||| Sbjct 1415675 GAATGAGAGTACA 1415687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823810252820