Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 167 2e-36 >seq3 Length=2894765 Score = 167 bits (184), Expect = 2e-36 Identities = 392/582 (67%), Gaps = 15/582 (3%) Strand=Plus/Minus Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004 |||||| | |||| ||||| || ||||| || | || ||||| | || || || Sbjct 1870039 AAGATGACTGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAG 1869980 Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 |||||||||||| || || || ||||| ||||||||||| | ||| || || | || Sbjct 1869979 TTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGC 1869920 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA--TCGTTCGGCG 17122 || || || || ||||| || || || || | ||| ||||| | || |||| ||| Sbjct 1869919 AAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGT--GGCA 1869862 Query 17123 TACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 |||||| || ||| | || ||||| | | ||||||||| || ||||| | ||| Sbjct 1869861 AACGTCGA-TCGTTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCA 1869803 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 || || || || | || || | || | ||| ||| || || || Sbjct 1869802 TGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGT 1869743 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 ||||||||| || ||| |||| ||||| ||||| ||||| ||||| ||||| || Sbjct 1869742 ATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATA 1869683 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGT 17360 ||| || ||| |||| || ||| ||||| | || | || || ||| | ||||| |||| Sbjct 1869682 AAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAACCGCTCCACCAGATTCTCGT 1869624 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATATGCTTAATGAAATATTTTTC 17418 | || || |||||| ||||| |||||||||| | ||||| | ||||||| ||| Sbjct 1869623 TGACAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATATGAT--ATGAAATGGCGTTC 1869566 Query 17419 GTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGG 17475 || | || | | |||||| | ||||||||| ||||| | ||||||| Sbjct 1869565 GTTATCATTCAGGTTATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGA 1869506 Query 17476 GGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||||||| |||| || || || ||||| | |||||| Sbjct 1869505 CGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1869464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545509429520