Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 >seq3 Length=2894765 Score = 134 bits (148), Expect = 1e-26 Identities = 361/542 (67%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 |||||||| | || || |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1869999 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1869940 Query 16283 TTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342 || | |||||| || | |||||| || || || ||||| || || || || | ||| || Sbjct 1869939 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAAC 1869880 Query 16343 GCGATTAA--TCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCAT 16399 || | || |||| || |||| | ||| || | || ||||| | | |||| Sbjct 1869879 GCCACCAACCTCGTG--GCAAACGTCG-ATCGTTGATCAGAGATCCACCTGAGGGCCCAC 1869823 Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCC 16459 |||| || || || | || || || || || | || || | || | | Sbjct 1869822 TCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGC 1869763 Query 16460 TGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCT 16519 ||| || || || ||||| || || | | ||| |||| ||||| ||||| || Sbjct 1869762 TGAGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCC 1869703 Query 16520 ATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAA 16578 || ||||| |||||||| || || || | || || ||||||||| | || |||| Sbjct 1869702 ATCATGATCTGGAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAA 1869644 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATG 16636 || ||| |||| ||||| || || |||||||| || ||||||||||||| | || Sbjct 1869643 CCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATA 1869584 Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATCTTTG 16693 || | ||||||| ||||| | | || | | | ||| || | ||||||| Sbjct 1869583 TGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATTGTTCCAGTCGAAGATATCTTTG 1869526 Query 16694 GATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAA 16753 || ||||| | ||||| | ||||||||| |||| || || || ||||| | |||| Sbjct 1869525 GACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAA 1869466 Query 16754 AT 16755 || Sbjct 1869465 AT 1869464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414310502480