Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 239 5e-58 seq6 147 2e-30 seq1 111 2e-19 >seq3 Length=2894765 Score = 239 bits (264), Expect = 5e-58 Identities = 400/572 (70%), Gaps = 11/572 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || ||||| |||||||||| ||| || |||||||| Sbjct 1868248 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1868189 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || || || | | | ||||||| | ||| | |||||||| ||||| || || || Sbjct 1868188 TCAAAAGATCTCCA-CGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTC 1868130 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| || || || ||||| || ||| || || |||||||||||||| || || ||||| Sbjct 1868129 GCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCG 1868070 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | | ||||| |||| ||| |||||||| ||||||||||| || || || || Sbjct 1868069 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1868010 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928 ||| || | ||| || | || || || ||||| || ||| | | | || Sbjct 1868009 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1867950 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | || || || ||| | || | ||||| || || || |||||| |||||| Sbjct 1867949 GCAACGCGAGTACC--TTTTTG-ATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1867893 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| || ||||||||| ||| | || | || | ||||| | || || Sbjct 1867892 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1867833 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| || || |||||| | ||||| || || ||||||| | || || ||| | || Sbjct 1867832 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1867773 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || || || ||| ||| || |||||| | |||||||| Sbjct 1867772 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1867713 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| |||||| || || ||| |||||| Sbjct 1867712 AATGCATACCGACTTCGCATGCTTGTTGTTCA 1867681 Score = 192 bits (212), Expect = 6e-44 Identities = 391/574 (68%), Gaps = 15/574 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || ||| |||| ||||| ||||| ||| ||| | || || Sbjct 1869464 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1869523 Query 116696 TCCAAGGACACGAGCGACTGGGAGCG---CTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || | ||||||| | | |||| || ||||| ||||||||||| Sbjct 1869524 TCCAAAGATATCTTCGACTGGAACAATAACCTGAATGATAACGAACGCCATTTCATATCA 1869583 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 | || ||||| ||||| ||||| |||||| || ||||||||||||||||| ||||| Sbjct 1869584 TATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1869643 Query 116812 -TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||||| | || || || | || || | || || || || || || |||||| | Sbjct 1869644 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCATGA 1869701 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927 |||| ||| | |||||||||| || || ||||||||| || ||| | |||| Sbjct 1869702 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTC 1869761 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | ||| | || || | |||||||| || || |||||||| ||||| Sbjct 1869762 AGCAGCGTGACTTCC---TCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGA 1869818 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCG-GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 |||||||||| || | |||||| | | || || | | || | | | | ||||| Sbjct 1869819 CCGAGTGGGCCCTCAGGTGGATCTCTGATCAACGA-TCGACGTTTGCCACGAGGTTGGTG 1869877 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || ||||| || || || || ||||||| || || ||| || | || || ||||| Sbjct 1869878 GCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1869937 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 |||||||| || |||||||| || | || || ||||| || || ||||||| Sbjct 1869938 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1869997 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 || |||| || ||||||||| | |||||| Sbjct 1869998 GGGATGCACACAGATTTTGCCTGTCTCTTGTTCA 1870031 >seq6 Length=2246423 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||||||||| || || || |||| ||||| | | Sbjct 329985 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 330044 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || |||||||| ||| ||||||| Sbjct 330045 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 330103 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| ||||| ||| |||||| || Sbjct 330104 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAA 330163 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| ||||||| || Sbjct 330164 CATCCAGAAGGAGTCCACCTTGCATCTCGT 330193 Score = 122 bits (134), Expect = 9e-23 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || || |||||| | || || || | | Sbjct 329416 ATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACGATCACCCTTGAGGTGGAGTCTTCG 329475 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| || || |||||| | ||||| Sbjct 329476 GACACCATCGATAACG-TCAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCA 329534 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 329535 GCAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAA 329594 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||||||||||| | || || ||||| | |||| |||||| Sbjct 329595 CATCCAGAAGGAGTCGACTCTTCATCT--CGGTGCGTTTGAGG 329635 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || || ||||| |||| || || | | Sbjct 329703 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 329762 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 329763 GACACGATCGATAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 329821 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 329822 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAA 329881 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||||||| | || || ||| Sbjct 329882 CATTCAGAAGGAGTCGACCCTCCAT 329906 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 330213 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 330272 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| |||| ||||| ||||| ||||| | ||||| Sbjct 330273 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 330331 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| || || || || | ||||| || |||||||| Sbjct 330332 GCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 330391 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || ||||| Sbjct 330392 TATCCAGAAGGAGTCGACTCTTCATCT 330418 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || |||||||| || || ||||| |||| ||||| | | Sbjct 330488 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTCGAGGTCGAGTCTTC 330547 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || |||| ||||| || || || || | ||||| Sbjct 330548 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 330607 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | |||||||| ||||| || |||| |||||||| |||||||| Sbjct 330608 GCAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 330667 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| ||| || || || Sbjct 330668 TATCCAGAAGGAGAGCACCCTTCACCT 330694 >seq1 Length=3243340 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| | || || || | | Sbjct 2260292 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2260351 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 2260352 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2260411 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || |||||||| || || | |||||| || || ||||| Sbjct 2260412 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAAT 2260471 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || ||||| Sbjct 2260472 ATCCAGAAGGAGTCTACCCTTCATCT 2260497 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || ||||| | || Sbjct 2260857 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2260916 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | || || | || || ||||||||||| |||| || Sbjct 2260917 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2260976 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | |||||||| ||||| || || | || ||||| |||||||||| Sbjct 2260977 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2261036 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 2261037 ATCCAGAAGGAGTCGACTCTTCACCTTGT 2261065 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | | Sbjct 2261085 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCG 2261144 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| || |||||||| |||||||| Sbjct 2261145 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2261204 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | |||||||| || |||| |||| ||||| || || |||||| Sbjct 2261205 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2261264 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||| ||| ||| || ||||| Sbjct 2261265 ATTCAGAAAGAGAGCACCCTCCATCT 2261290 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || || || || ||||| |||| ||||| | | Sbjct 2260572 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2260631 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| || || || || | ||||| Sbjct 2260632 GACACTATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2260690 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||| |||| || | ||| || ||| ||| ||||| Sbjct 2260691 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2260750 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| ||||| ||| | || ||||| || Sbjct 2260751 CATTCAGAAAGAGTCTACTCTGCACCT 2260777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219109836640