Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 >seq3 Length=2894765 Score = 104 bits (114), Expect = 2e-17 Identities = 369/571 (65%), Gaps = 13/571 (2%) Strand=Plus/Minus Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 |||| | ||| |||||||| |||| |||||||||| ||| || | ||||| ||| Sbjct 1870029 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1869970 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| ||||| || |||||||| || | ||| || || | ||||| || || Sbjct 1869969 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1869910 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || ||||| || ||||| || || || || || ||||| | | | |||| | || Sbjct 1869909 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGT-CGATCG 1869851 Query 16406 ttactttct-atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 || | ||||| | ||||| | | || || || || || || |||| Sbjct 1869850 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1869791 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTA----TCTAAAATATAAGTATCTATTA 16520 || | ||| || | | | | |||| || |||| || ||||| || | Sbjct 1869790 GATCGAATTGAAGAGGAAGTCA----CGCTGCTGAGAGTCAGAAATGTAGGTATCGATGA 1869735 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | | | || |||| || ||||| || ||||| ||||| || |||||||| || | Sbjct 1869734 GGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGC 1869675 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 |||| | ||||||||| |||||| || | | || ||||| || || | Sbjct 1869674 GGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATAC 1869615 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAA 16699 | ||| ||| ||||||||||| || | | | || |||| ||||||||| | | Sbjct 1869614 CGTCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCA 1869555 Query 16700 AGT--TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAG 16757 || || |||||| | | |||||| || | ||||| |||||| |||||||| | Sbjct 1869554 GGTTATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACG 1869495 Query 16758 AAGCAACAGCCTTTTTATACATTTTCCATAT 16788 |||| || || || ||||| | ||| || Sbjct 1869494 AAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1869464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511919060400