Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq1 116 3e-21 seq6 105 6e-18 >seq3 Length=2894765 Score = 147 bits (162), Expect = 2e-30 Identities = 377/566 (67%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| || || | || ||||||||||| |||||| | || || Sbjct 1869464 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1869523 Query 57630 TCTAAGGATCTGAGCGATTGGGA---TTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| | ||| ||| | | ||| || || || | |||| || | Sbjct 1869524 TCCAAAGATATCTTCGACTGGAACAATAACCTGAATGATAACGAACGCCATTTCATATCA 1869583 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 | || |||||||||| ||||| ||||| |||||||| ||||||||| |||| || | Sbjct 1869584 TATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1869643 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| ||||| |||| | || | | || ||||| ||||| || | || Sbjct 1869644 TTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCATGATG 1869703 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC----GTGAAGGACAA 57862 |||||| | || || |||| || || || ||||||||||| ||| ||| || Sbjct 1869704 GAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTCAG 1869763 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGG 57921 | || | || | || ||||| ||||||| || || || ||| || ||||| Sbjct 1869764 CAGCGTG--ACTT--CCTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGAAGA 1869818 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG-GCCACGTTCGCCGAGAGGCTAATC 57980 | |||||| | ||| ||||| | | ||| | ||||| ||| |||| | | Sbjct 1869819 CCGAGTGGGCCCTCAGGTGGAT-CTCTGATCAACGATCGACGTTTGCCACGAGGTTGGTG 1869877 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 |||||||| || || ||||| || ||||| || || ||||| |||| || ||| || Sbjct 1869878 GCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1869937 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 |||||||| || || ||||| || | || ||| ||||| |||| || ||||| Sbjct 1869938 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1869997 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || | || || |||||||| || || Sbjct 1869998 GGGATGCACACAGATTTTGCCTGTCT 1870023 >seq1 Length=3243340 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||||||||| ||||||| || |||||||| |||| || || | || Sbjct 2260571 CATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2260630 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || || |||||||||||| | || |||||||| Sbjct 2260631 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2260690 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || |||||||| || |||||||| || ||| | |||||| || Sbjct 2260691 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2260750 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398 |||||| ||||| || ||||| || || Sbjct 2260751 CATTCAGAAAGAGTCTACTCTGCACCT 2260777 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || ||||| | || || || | || Sbjct 2260291 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTC 2260350 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || || ||||||||| || | || |||||||| Sbjct 2260351 GGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCA 2260410 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||| |||||| | || || Sbjct 2260411 GCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGA 2260446 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| |||||||| | || || || | || Sbjct 2261085 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCG 2261144 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | ||||| |||||| Sbjct 2261145 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2261204 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| || ||||| ||| | || | ||||| ||| Sbjct 2261205 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2261264 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 ||||| ||||| || || ||||||| Sbjct 2261265 ATTCAGAAAGAGAGCACCCTCCATCTGG 2261292 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||| ||||| || |||||| | || || || ||||| Sbjct 2260857 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2260916 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| || || ||| ||||| ||| | || || || || Sbjct 2260917 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2260976 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || || ||| | ||| || ||| Sbjct 2260977 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2261036 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||||||||| || || || | || | ||||||| Sbjct 2261037 ATCCAGAAGGAGTCGACTCTTCACCTTGTCCTCCGTCTTCGCGGCGGTA 2261085 >seq6 Length=2246423 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || || || ||||| || || || || ||||||||| | || || || | | Sbjct 329414 ACATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACGATCACCCTTGAGGTGGAGTCTT 329473 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 | |||| |||| | ||||| || || |||||||||||| | || ||||||| Sbjct 329474 CGGACACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACC 329533 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||| | || ||||| ||||| ||| | || ||| || | || |||| Sbjct 329534 AGCAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATA 329593 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT 31398 |||| || || || |||||||||||||| Sbjct 329594 ACATCCAGAAGGAGTCGACTCTTCATCT 329621 Score = 104 bits (114), Expect = 2e-17 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 330212 CATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 330271 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||| || | ||||| |||| Sbjct 330272 TGACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACC 330330 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||||| || || ||||| ||||| || | || || | | | ||| | || || Sbjct 330331 AGCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGA-TGGACGCACTCTTTCGGACTAC 330389 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 || || || || || |||||||||||||| ||||| Sbjct 330390 AATATCCAGAAGGAGTCGACTCTTCATCTCGGTAC 330424 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || |||||||| |||| || || | || Sbjct 329702 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 329761 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 329762 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 329821 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | |||||| || | || ||||| Sbjct 329822 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAA 329881 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGG 31400 |||||| || || ||||| || ||| ||| Sbjct 329882 CATTCAGAAGGAGTCGACCCTCCATTTGG 329910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || ||||| ||||| || |||| || || | || Sbjct 329985 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 330044 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || || ||||| ||| | || || |||||| Sbjct 330045 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 330104 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || ||| ||| | ||| |||||| Sbjct 330105 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAAC 330164 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || | ||||| || ||| Sbjct 330165 ATCCAGAAGGAGTCCACCTTGCATCTCGTCCTT 330197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766321990880