Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 >seq3 Length=2894765 Score = 178 bits (196), Expect = 2e-39 Identities = 381/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| ||| |||||||| ||| |||| |||||||| | ||| || ||||| ||||| Sbjct 1867683 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1867742 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1867743 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1867802 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--- 50127 || ||||| || || || || ||||| ||||| || | || ||| || | ||| | Sbjct 1867803 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1867862 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | || ||||| | | ||||| || |||||| |||| ||||| || || || || Sbjct 1867863 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1867922 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 | |||| ||| || || | || ||| || || | ||||||||||| | ||| Sbjct 1867923 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1867982 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1867983 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1868042 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | ||| || || | | || || ||| | | || || || || || || ||| Sbjct 1868043 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCA 1868102 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA----G 50423 ||| ||||||||||| | ||||| | ||| || || || | |||| | Sbjct 1868103 GAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATT-GTCGTTAAGGCG 1868161 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 |||||||| || | || |||||| || | || | |||||| | ||||| || || || Sbjct 1868162 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1868221 Query 50484 CTCTGCCTTTTTATACATATTCCAGAT 50510 || || || || ||||| | |||||| Sbjct 1868222 TTCAGCTTTCTTGTACATTTGCCAGAT 1868248 Score = 174 bits (192), Expect = 2e-38 Identities = 380/566 (67%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| | ||| || ||||| ||||| || ||||| | |||||| |||||||| ||| Sbjct 1870029 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1869970 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | || ||||| || || || || || ||||| || || || ||||| || || Sbjct 1869969 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1869910 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGC 50128 || |||||||| |||||||| || || || || || | ||| || | | | || Sbjct 1869909 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCGATCGT 1869850 Query 50129 TG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 || ||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1869849 TGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1869790 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || | ||| ||||| ||| | | | || || || |||||||| | ||| Sbjct 1869789 ATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAGA 1869730 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||||| ||||||||||| || ||||| ||||| || ||||| | | Sbjct 1869729 GAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGACT 1869670 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | || ||||| | |||| || || | | ||| || || || || ||||| Sbjct 1869669 TCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCG 1869610 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || ||||||||||||| |||| | ||| ||||| |||||| | || ||| Sbjct 1869609 GAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTTA 1869550 Query 50428 ---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 ||||| || ||||||||| || ||||| | ||||| |||||||| || ||| Sbjct 1869549 TTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCC 1869490 Query 50485 TCTGCCTTTTTATACATATTCCAGAT 50510 | || || || ||||| | ||| || Sbjct 1869489 TGGGCTTTCTTGTACATCTGCCAAAT 1869464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268674302960