Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 116 5e-21 >seq3 Length=2894765 Score = 116 bits (128), Expect = 5e-21 Identities = 337/510 (66%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| || ||| | || || || ||||| | |||||| | || ||| Sbjct 1868248 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1868189 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || || |||| ||| | | || | | || | |||||| | ||| | ||| Sbjct 1868188 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTCG 1868129 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 || | | || || ||||| | ||| ||||| ||||||||||| || | |||||| || Sbjct 1868128 CATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGA-GCG 1868070 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||||| | ||| | || | | |||| | ||||| ||||| |||||||| ||| Sbjct 1868069 CTTCTCGAACGAG--GTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1868012 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || || || | ||| || | ||||| || || || | ||||| || || Sbjct 1868011 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1867952 Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 |||||| | || || ||| | || | || || | || | | | | ||| Sbjct 1867951 AAGCAACGCGAGTAC---CTTTTTGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAG 1867895 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGACTGGT 125431 || | |||| | || |||||| || || | || | | || || || | || Sbjct 1867894 GCGGACTGGGCACTACGCTGGATCTCCGATCGTC-GCTCCACATTTGCTGAGCGATTAGT 1867836 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || |||||||| || |||||||| ||||| || ||| ||| || | ||||| ||| | Sbjct 1867835 CGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTT 1867776 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||| || |||||||| ||||| || Sbjct 1867775 GAAGAAGCGTGGCCTCATGCCTGGACTCAC 1867746 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 ||||||||||||| |||||| |||||| ||||||| |||||||| ||||||||||| | Sbjct 1867525 TGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGATCGTCTGC 1867466 Query 125758 TGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | | | |||| ||| |||||||| | || ||||| || || ||| || Sbjct 1867465 TCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACA 1867406 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || | |||| ||||||||||| || |||||| Sbjct 1867405 TGATCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAG 1867368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059070314640