Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 134 3e-26 seq3 134 3e-26 seq1 113 1e-19 >seq6 Length=2246423 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| |||||||| || || | |||||| || || || || || |||||| Sbjct 330679 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAA 330620 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 330619 ATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 330560 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || |||||||| || || || || ||| Sbjct 330559 TCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCCGTGAGGGTCTTGACA 330500 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 330499 AAGATCTGCATT 330488 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| || |||||||| || || || | ||||| || || Sbjct 329621 AGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 329562 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || ||||| | | ||| || || || || |||||||| || ||||||||| Sbjct 329561 TGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 329502 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | ||| || || || ||||| || || || ||||| ||| Sbjct 329501 TTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATCGTCTTCCCA 329442 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| |||||||| Sbjct 329441 GTGAGGGTCTTCACAAAGATCTGCAT 329416 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| ||||| ||||| || ||||| | || || || ||| Sbjct 330418 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 330359 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || ||||| || | ||| || ||||| || || || || || ||||||||| Sbjct 330358 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 330299 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || || || | || || | || ||||| || || || ||||| || Sbjct 330298 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCG 330239 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 330238 GTCAGGGTCTTGACGAAGATCTGCAT 330213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | |||||||| || || || || Sbjct 329899 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCC 329840 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || || || || || ||||| ||||| || || Sbjct 329839 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 329780 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| ||||| | || Sbjct 329779 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 329720 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 329719 TTCACGAAGATCTGCAT 329703 >seq3 Length=2894765 Score = 134 bits (148), Expect = 3e-26 Identities = 365/546 (67%), Gaps = 26/546 (5%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| ||||||||| | ||| ||||| |||||||| ||||| | ||| || Sbjct 1869464 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1869523 Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAG---AAAGAAG---ATTT-AT 268845 || | || | | || ||||| ||| |||| ||| || ||| |||| || Sbjct 1869524 TCCAAAGATATCTTCGACTGGAACAAT----AACCTGAATGATAACGAACGCCATTTCAT 1869579 Query 268846 ATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA 268905 ||| ||| | || ||||||||||| | | || ||||| || ||||| ||||| || || Sbjct 1869580 ATCATATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1869639 Query 268906 GAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGC 268965 | ||| | || ||||| |||||| | | |||||||| ||||||||||| Sbjct 1869640 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCAT 1869699 Query 268966 TATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGA-TA 269024 || ||||| ||||| || || | ||| ||| | || ||||| || || ||| | Sbjct 1869700 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTC 1869759 Query 269025 ACAACGAAAAGAAAAGACT--ATTTTC--TTCTAT-GAGAACTATGGACTGTGTGAGaaa 269079 || | || |||| | ||| ||| || ||| ||||| || || | | Sbjct 1869760 TCAGC----AG-CGTGACTTCCTCTTCAATTCGATCGAG-ACTATACCATGCGTCAAGCA 1869813 Query 269080 aaaaTCTGAATGGGCTCTGAAATGGATAAACGAT-AGCG--CGCCTTACGGAGAAAGGTT 269136 || | || ||||| || | ||||| ||| | || || | | | ||||| Sbjct 1869814 GAAGACCGAGTGGGCCCTCAGGTGGATCTCTGATCAACGATCGACGTTTGCCACGAGGTT 1869873 Query 269137 AGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTG 269196 || || || || || |||||||| || ||||| || || |||||||| | ||||| || Sbjct 1869874 GGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTG 1869933 Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256 | |||||||| |||| || ||||| || ||||| || ||||||||| |||| || |||| Sbjct 1869934 GCTGAAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGA 1869993 Query 269257 CGAAGG 269262 |||||| Sbjct 1869994 CGAAGG 1869999 Score = 118 bits (130), Expect = 2e-21 Identities = 299/447 (67%), Gaps = 17/447 (4%) Strand=Plus/Minus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || ||||||||||| | |||||||||||| ||||| || || || ||| |||| Sbjct 1868122 CTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1868063 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 | ||||| ||| |||| || | || || ||||| ||||| || || |||||| Sbjct 1868062 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1868003 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGA---TAA-CAACGA 269031 || || |||| ||| || | || |||||||| || | || ||| ||||| Sbjct 1868002 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1867943 Query 269032 AAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAAT 269090 | | || ||| | || | |||| | || |||||| | || || | || | Sbjct 1867942 GAGTAC----CTTTTTGATGCTGTTGAGACC-ATTCCCTGTGTCAAAAGGAAGGCGGACT 1867888 Query 269091 GGGCTCTGAAATGGATAAACGATAG-CGCGCC----TTACGGAGAAAGGTTAGTTGCTTT 269145 |||| || ||||| |||| | ||| || || | ||| | ||||| || || Sbjct 1867887 GGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGA--TTAGTCGCCTT 1867830 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 |||||||| || || || ||||| || || ||||| ||| | ||||| ||||||||||| Sbjct 1867829 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1867770 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 | ||||| ||||| ||| | || ||||| || ||| | || || | ||||| || | Sbjct 1867769 GCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAAT 1867710 Query 269266 ACACTGCGACTTCGCTTGTTTATTATT 269292 || ||||||||| || || || || Sbjct 1867709 GCATACCGACTTCGCATGCTTGTTGTT 1867683 >seq1 Length=3243340 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||||||||| || || || || ||||||| || || || | || |||||| Sbjct 2260768 GTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2260709 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || || || ||||| || ||||| || ||||||||||| || || Sbjct 2260708 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2260649 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || ||||| || || || ||||| || || | || Sbjct 2260648 ACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTC 2260589 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 2260588 TTTACGAAAATCTGCAT 2260572 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| || ||||| ||||| || ||||| || || | || || || || Sbjct 2260497 AGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGC 2260438 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 ||||| ||||| || || || | ||| || || ||||| || || || || ||||||||| Sbjct 2260437 TGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATC 2260378 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || ||||| || | || || || || || || || || || ||||| || Sbjct 2260377 TTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCC 2260318 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||| || || || |||||||| Sbjct 2260317 GTCAATGTCTTGACGAAGATCTGCAT 2260292 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || || || || || || | |||||| || | ||| || || |||||| Sbjct 2261275 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2261216 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || || || || || ||||| || || |||||||| || || ||||| Sbjct 2261215 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2261156 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || |||||||| | || || ||||| || || || || || || Sbjct 2261155 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCTGTGAGGGTCTTGACG 2261096 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2261095 AAGATCTGCAT 2261085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398193467912