Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 seq1 91.5 1e-13 >seq6 Length=2246423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCT 94856 |||| || || | ||| || ||||| || | |||||| || | ||| | |||| Sbjct 329626 CACCGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCT 329567 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || || | || || || | ||||| || || || || ||||| ||||| | Sbjct 329566 CGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCT 329507 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||||||| ||| ||||| | || || |||| ||||| || | Sbjct 329506 GAATCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATCGTCT 329447 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| || || |||||||||||||||||| Sbjct 329446 TCCCAGTGAGGGTCTTCACAAAGATCTGCATG 329415 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || |||| || | | ||||| || |||||||| ||||| ||| Sbjct 330643 TCCTCGAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTG 330584 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | ||| ||||| | ||||| || | |||||| Sbjct 330583 TCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATT 330524 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||||||||| Sbjct 330523 GTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 330489 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || || ||| | || || | | ||||| || || || ||||| || || Sbjct 330368 ATCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTT 330309 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| ||| | ||| ||||||| ||||| || | |||||| Sbjct 330308 GTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGAT 330249 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || || ||||||||||||| Sbjct 330248 CGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGC 330211 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94800 CCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | || || ||||| || | |||||| || | ||| | || || | Sbjct 329910 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 329851 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || | ||||| || | ||||| || || || || || || ||||| | | Sbjct 329850 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 329791 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||||||| ||| ||||||| || || || | |||||| || |||| Sbjct 329790 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 329731 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| | || ||||| ||||||||||||| Sbjct 329730 CAGTCAACGTCTTCACGAAGATCTGCATGC 329701 >seq1 Length=3243340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| |||||||| || | ||||| | | ||||| || ||||| ||||| || || Sbjct 2260447 ATCCTCAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTT 2260388 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||| | ||| |||||| | || || |||| ||||| Sbjct 2260387 GTCCTGAATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGAT 2260328 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || | || || || ||||||||||||| Sbjct 2260327 GGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCATGC 2260290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291121549040