Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-21 seq1 98.7 2e-16 >seq8 Length=1775491 Score = 114 bits (126), Expect = 2e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| |||| |||| ||||| || |||||||| || ||||| ||||| ||||| Sbjct 1613637 GCTAAGCGTCACCGCAAGATC-CTTCGTGACAACATCCAGGGCATCACGAAGCCCGCTAT 1613579 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || |||||||| || || || ||| |||| || | |||| || |||| Sbjct 1613578 CCGCCGCCTCGCACGTCGTGGCGGTGTGAAACGTATCTCGGGCCTCATCTACGAGGAGAC 1613519 Query 16552 TCGTGATGTTTTGAAGATCTTCCTC 16576 || | |||| | |||||||||||| Sbjct 1613518 CCGCGGTGTTCTCAAGATCTTCCTC 1613494 >seq1 Length=3243340 Score = 98.7 bits (108), Expect = 2e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||||||||| || |||||||| || ||||||||| |||| || | |||| ||| Sbjct 1167732 GCTATCCGTCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCAGGTCTTATCTACGAA 1167791 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| |||| || | |||||||||||| ||| || || | ||| || || || Sbjct 1167792 GAGACCCGTGGCGTCCTCAAGATCTTCCTCGAGAATGTCATTCGTGACTCTGTCACATAC 1167851 Query 16607 ACCGAGCACGCTAAACG 16623 |||||||| ||||| || Sbjct 1167852 ACCGAGCATGCTAAGCG 1167868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075187199702