Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq1 113 4e-20 >seq6 Length=2246423 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| |||| || ||||||||| Sbjct 330213 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 330272 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| ||||| | ||| ||||| || || || || |||||||| Sbjct 330273 GACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACCA 330331 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| |||||||| ||| | || |||| |||||| | || ||||| Sbjct 330332 GCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 330391 Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202 ||| || || || || || || ||| Sbjct 330392 TATCCAGAAGGAGTCGACTCTTCAT 330416 Score = 105 bits (116), Expect = 6e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || ||||| | ||||| |||| || ||||| || Sbjct 330488 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTCGAGGTCGAGTCTTC 330547 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || | || || | ||| ||||| ||||||||||| || || Sbjct 330548 GGACACGATCGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAAGGGATTCCTCCCGA 330604 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | |||||||| ||||| || | || || | |||||| || || || Sbjct 330605 CCAGCAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTA 330664 Query 25175 CAATATTCAAAAAGA 25189 |||||| || || || Sbjct 330665 CAATATCCAGAAGGA 330679 >seq1 Length=3243340 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| ||||| || || | ||||| |||| || ||||| || Sbjct 2260572 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2260631 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || ||||| | || | ||| ||||| ||||||||||| || ||||| Sbjct 2260632 GACACTATTGACAACGTGAAGGCGAAGATTCAG-GACAAGGAAGGGATTCCTCCCGACCA 2260690 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | || || || || || || || || |||| || ||| | ||||||||| Sbjct 2260691 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2260750 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| || || || || Sbjct 2260751 CATTCAGAAAGAGTCTACTCTGCA 2260774 Score = 104 bits (114), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | ||||||||||| || Sbjct 2260292 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2260351 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | || || | ||| ||||| || || || || || ||| Sbjct 2260352 GACACTATCGA--CAATGTCAAGGCGAAGATTCA-GGACAAGGAGGGTATCCCTCCCGAC 2260408 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| || || || ||||| | || |||| ||||| | |||||| Sbjct 2260409 CAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTAC 2260468 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 ||||| || || || || || || ||| Sbjct 2260469 AATATCCAGAAGGAGTCTACCCTTCAT 2260495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327926063410