Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 190 2e-43 seq10 86.0 7e-12 >seq3 Length=2894765 Score = 190 bits (210), Expect = 2e-43 Identities = 382/563 (68%), Gaps = 15/563 (3%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || || || | |||||||| || |||| || || || |||||| Sbjct 1870020 CAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1869961 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || ||||||||||| ||||| || |||||||||||| || || || || Sbjct 1869960 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1869901 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270 || ||||| || ||||| || ||||| | | |||||| | | || || | Sbjct 1869900 ATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCG----ATCGTTGATC 1869845 Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 |||||| | | ||||| |||| || | ||| | || |||| || ||||| | Sbjct 1869844 AGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGA 1869785 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || ||| | || |||| | || || ||||| |||||||| | ||||| || Sbjct 1869784 ATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTA 1869725 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||| || || | || ||||| || |||||||| || ||||| | |||| | Sbjct 1869724 TGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGACTTCAGC 1869665 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | || ||||| ||||| | ||| || ||||| || ||||| ||||| ||||| || Sbjct 1869664 GGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGC 1869605 Query 93508 TGCaaaaaaaGCCA--ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC- 93564 |||||||| |||| | ||||| | || ||||| || | ||| || || |||| Sbjct 1869604 GGCAAAAAACGCCAGGACATATGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATTG 1869547 Query 93565 --CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 ||| ||| | | |||||| || | ||||| |||||| ||||||||||| || | Sbjct 1869546 TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGG 1869487 Query 93623 GCTTTTTTGTACATATCCCATAT 93645 ||||| |||||||| | ||| || Sbjct 1869486 GCTTTCTTGTACATCTGCCAAAT 1869464 Score = 179 bits (198), Expect = 4e-40 Identities = 381/568 (67%), Gaps = 3/568 (1%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 || ||| ||||| || ||||||||||| | || ||||| || || | |||||| Sbjct 1867681 TGAACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1867740 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 ||| || | || || | || || || ||||| | ||| || ||||| || ||| || Sbjct 1867741 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1867800 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || ||||| || || || || || | || || ||||| | | | Sbjct 1867801 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGC 1867860 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | |||||| || ||||| || || || | || | ||| || | || | Sbjct 1867861 GACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCT 1867920 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | | ||| | ||| ||||| || || | | | || ||||| |||||||| | | Sbjct 1867921 CAACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAA 1867980 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || || | || |||| ||| ||||| ||||||||| |||||||| || | | Sbjct 1867981 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1868040 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | ||| || || | || || | ||| || || || || ||||| ||||||| Sbjct 1868041 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCAT 1868100 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC- 93559 | || || |||||||| || | | |||| | ||| || ||||| || ||||| Sbjct 1868101 CAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1868160 Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 |||| ||| ||| ||||||||||| || || | ||||||| | ||||| || || | Sbjct 1868161 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1868220 Query 93618 CTTCTGCTTTTTTGTACATATCCCATAT 93645 |||| ||||| |||||||| | ||| || Sbjct 1868221 CTTCAGCTTTCTTGTACATTTGCCAGAT 1868248 >seq10 Length=1343669 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 617658 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 617599 Query 126333 ACCCCAC 126339 | ||||| Sbjct 617598 ATCCCAC 617592 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 628922 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 628981 Query 126333 ACCCCAC 126339 | ||||| Sbjct 628982 ATCCCAC 628988 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 629237 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 629296 Query 126333 ACCCCAC 126339 | ||||| Sbjct 629297 ATCCCAC 629303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860702549360