Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq6 86.0 5e-12 >seq1 Length=3243340 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||||||||| | | Sbjct 2260292 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2260351 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| |||||||||||||| || ||||| || Sbjct 2260352 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2260411 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || |||||| | |||||| ||||| | || |||||||| Sbjct 2260412 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAAT 2260471 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | ||| Sbjct 2260472 ATCCAGAAGGAGTCTACCCTTCAT 2260495 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || ||| ||||||| || || || | | Sbjct 2260572 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2260631 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||| || ||||| ||||| || Sbjct 2260632 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2260691 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||||| |||||| || || |||||||||||||| Sbjct 2260692 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAC 2260751 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 2260752 ATTCAGAAAGAGTCTAC 2260768 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| || || || || || || ||||| || || ||||| ||||| Sbjct 2261169 AAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAACGCCTGATTTTTGCGGGCAAG 2261228 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || ||||| ||||| | || |||||||||||||| ||||| |||| | ||| Sbjct 2261229 CAATTGGAGGACGGTCGCACACTTTCGGATTACAACATTCAGAAAGAGAGCACCCTCCAT 2261288 >seq6 Length=2246423 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || ||| | || || || || || | | Sbjct 329985 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 330044 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || |||||||| |||||||| ||||| || || || Sbjct 330045 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 330104 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | ||||| |||||| ||||||| || ||| Sbjct 330105 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAAC 330164 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||| | || | || | || ||||| Sbjct 330165 ATCCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGTCTACGTGGAGG 330211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727928383910