Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 114 3e-20 seq2 93.3 9e-14 seq3 87.8 4e-12 >seq6 Length=2246423 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||||| |||||| | |||||||| | | ||||| Sbjct 625008 TCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGTTGTTCAAGGCCGA 624949 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 |||| |||| || ||||| || |||||| ||||| |||||| |||||||||| Sbjct 624948 CATCCTGTTGCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTTGCCTGGCTAGA 624889 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 | |||||| ||| | || | | | ||| |||| ||||| |||||||| ||||| Sbjct 624888 GAACTACCTGACCGGCCTTACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTT 624829 Query 279884 CCT 279886 ||| Sbjct 624828 CCT 624826 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| | || ||||| ||| | || ||||| || || ||||| | || |||| |||| Sbjct 624537 TGTCCTCGGCCCCAACGGTTCCGGCAAGTCGACGCTCGTCAAATTGCTCACTGCAGAGAT 624478 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 || | | |||| || | | |||||||| |||||| || || | ||| || || Sbjct 624477 GGAGCCGAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGTTATGTTGC 624418 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||||||||||||||| || ||||| || |||| ||| || | | ||||| Sbjct 624417 CCAGCACGCTTTCCACCACATTGATAACCATCTCGACAAGACGCCCCTCGAGTACATGTT 624358 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 624357 GTGGCGTTA 624349 >seq2 Length=2778437 Score = 93.3 bits (102), Expect = 9e-14 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| |||| || ||||| | || || || || || |||| | || |||||||||| Sbjct 434105 TGTCCTTGGCCCTAATGGCTCCGGCAAATCCACGCTCGTCAAGTTGCTCACTGGCGAGAT 434164 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 |||||| |||| || | | |||||||| || ||| || || | || ||||| Sbjct 434165 GGAGGCCAACAAGGGTGGTGAGGTGTGGAAGCACCCAAACTTGGTCATCGGCTATGTCGC 434224 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 || ||||||||||||||||| || ||||||| |||| ||| ||| | ||||| | Sbjct 434225 CCAACACGCTTTCCACCACATTGATCACCACCTCGACAAGACGCCTTTGGAGTACATGCT 434284 Query 280349 GTGGCGCTATGCAAGTGGGC-AGGATCTGGA 280378 ||||| || || |||| |||||||||| Sbjct 434285 CTGGCGGTA-CCAGACGGGCGAGGATCTGGA 434314 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || || ||||||||||||||||| || ||| |||| || || || | || || Sbjct 433634 TCTTTCCGGCGGTTGGAAGATGAAGCTCGCTCTCGCTCGTGCGATGCTCTTCAAGGCTGA 433693 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | |||| |||| |||||||| || ||||| |||| | |||||| |||||||| | Sbjct 433694 TATCCTCTTGCTCGATGAGCCGACTAACCATTTGGATGTCGTCAACGTTGCCTGGCTCGA 433753 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 ||||| || | || | | |||| |||| ||||| ||||||||||| || Sbjct 433754 AAATTACCTCACTGGCCTTACCCACTGCACTTCGATCATCGTCTCGCACGACTCTGGGTT 433813 Query 279884 CCT 279886 ||| Sbjct 433814 CCT 433816 >seq3 Length=2894765 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || ||||| || || ||||| || | ||| |||| || ||||| | ||||| Sbjct 1867354 TAATCCGATACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAAGGAGATCATGTCCATA 1867413 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCA---AGTGCTACGAAGATG 251661 ||||||||||||||||| || ||||| ||||| | |||| || || | || | Sbjct 1867414 AAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTT---TTCGCCACCGAGGGCAATGAGCAGA 1867470 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 || ||||| |||||||| | ||||| | ||| || | | ||||||||||||| Sbjct 1867471 CGATCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCAATCA 1867525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836615631774