Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 3e-14 seq3 87.8 4e-12 >seq9 Length=1679134 Score = 95.1 bits (104), Expect = 3e-14 Identities = 197/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 298199 TCGGTCATGATCATCACATGACCGTAACG-AAGCGAG-GACGTGTCTTTGTACACTTTAC 298256 || ||||| ||||||| || ||||| || || | | ||||| || | ||| |||| Sbjct 1415437 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGACGT-TCGTA-TACTCTTTGT 1415494 Query 298257 CGGTTTGAAGGCCGAGAAT-TTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTT 298315 | | || ||||| | ||| || ||| | ||| |||||||||||||||| |||| || Sbjct 1415495 TGCTCTGGAGGCCCATAATCTTCTTTATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTG 1415552 Query 298316 GCCACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 | || | | || ||||| || || | | ||| || ||||| ||||| |||||| | | Sbjct 1415553 GTCATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTT 1415612 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 ||||| ||||| || || ||| || | ||||| | || ||||| || || || Sbjct 1415613 GTCGCGCCCGACGACACCCAACCCCGCAACAGCAAGGGCTTTGGCAGAATCTCCTTCAGT 1415672 Query 298435 CAGAATGAGAGTGCACATTTTGCTG--TTATTCGTTCCAGC 298473 ||||||||||| |||||| | || || |||| ||||| Sbjct 1415673 GAGAATGAGAGT--ACATTTAGATGCATTCCTCGTCCCAGC 1415711 >seq3 Length=2894765 Score = 87.8 bits (96), Expect = 4e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 |||| ||||||||||| | | |||||| | ||||||||||| || || || || || Sbjct 1867528 GGCTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGATCGTC 1867469 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | |||| || || ||| || || |||||| | | |||||||| | |||||||| Sbjct 1867468 TGCTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGG 1867409 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | | || || | || ||||| || |||||||| || ||||| || Sbjct 1867408 ACATGATCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1867363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879802170900