Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 seq1 82.4 9e-11 >seq3 Length=2894765 Score = 138 bits (152), Expect = 1e-27 Identities = 340/506 (67%), Gaps = 15/506 (3%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||||||||| |||||||||||| |||||| ||||| |||||||| || |||||| Sbjct 1867713 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1867772 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 ||||||||||| || | || ||||| |||||||| || ||||||||| ||||| Sbjct 1867773 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1867832 Query 126185 GCAAAGAGACGCTCAGCAAA---GGAGCG-CGACTTTGTGTCAAACCACTTCATCGCCCA 126240 || | | ||||||||||| |||||| ||| | | | | ||| | ||||| Sbjct 1867833 GCGACTAATCGCTCAGCAAATGTGGAGCGACGA-TCGGAG---ATCCAGCGTAGTGCCCA 1867888 Query 126241 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTT 126299 | |||||| | | || ||| || | ||||| | || ||||| || | || | || Sbjct 1867889 GTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCAAAAAGGTACTCGCGTTG 1867948 Query 126300 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTT 126359 || | || || |||||||| |||| || || || || || |||| ||||| ||| Sbjct 1867949 CTTA-GGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTT 1868007 Query 126360 -CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 126418 ||| || || || ||||||| | ||||| || ||| ||||| | | Sbjct 1868008 CCATCAT-AATTTGGAACCCGTAGAAGCAACGCGCCTCAGCCGCCTGAACCTCGTTCGAG 1868066 Query 126419 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 126478 || | | | ||||| || || ||||| || ||||||||||||| |||| | Sbjct 1868067 AAGCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCAAAAAACGCGAGGACA 1868126 Query 126479 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTC 126535 | | | || | | ||||| ||||| | || | |||||||||| ||||| || Sbjct 1868127 TGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCGGTTATTCCAGTCGTGGAGATCTTTT 1868186 Query 126536 GAGAGATCTACCTCCTCCGCAGTCCA 126561 || || || | || || || ||||| Sbjct 1868187 GACAGGTCCATTTCTTCGGCGGTCCA 1868212 >seq1 Length=3243340 Score = 82.4 bits (90), Expect = 9e-11 Identities = 215/324 (66%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 10875 CAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 |||| ||||||||||| | |||| || || |||| || ||||| || || ||| | Sbjct 2072037 CAAAACCATCCATCTC-GACAAGGAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTCCCA 2072095 Query 10934 GGCATA---CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 ||| || ||| | |||| |||||| | ||||||||||||||||||||| | | Sbjct 2072096 CCCATGTTGCCTCCCTTTCCGCGTGACTTACCAATGGCGTCAATTTCATCGATGAAGATG 2072155 Query 10991 ATACACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACC 11046 || || || || | ||| ||| | | || | || || || | | || ||| Sbjct 2072156 ATGCAAGGGGCATTTTTCTTCGCGGAC----GCGAAAAGGTCGCGTACACGCGAGGAACC 2072211 Query 11047 GACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGA 11106 ||||| || ||||| || || || | || |||| || ||| |||||| | | Sbjct 2072212 AACACCGACGAACATCTCGACGAATTCGGAACCGGAGACGGAGAGGAAAGGGACGCTCGC 2072271 Query 11107 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAG 11166 ||| || ||| |||| || || | ||||| ||||| ||||| || | ||| | Sbjct 2072272 TTCGCCGGCGGTGGCCTTAGCAAGTAACGTCTTTCCCGTACCAGGAGGTCCGGAGAGGAT 2072331 Query 11167 GGCACCACGTGGGATCCTGGCACC 11190 |||||| || |||||| | || || Sbjct 2072332 GGCACCGCGAGGGATCTTAGCCCC 2072355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353495463120