Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq3 102 8e-17 seq1 98.7 1e-15 seq5 93.3 4e-14 >seq6 Length=2246423 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | ||| || ||||||||||| || |||| Sbjct 330406 GACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCG 330347 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || ||||| ||||| || || ||||| || ||||| ||| | |||| || | Sbjct 330346 AAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC-CTGAATCTTTGCCTTCAC 330288 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||| ||||||| ||| | ||| || || ||||| || | Sbjct 330287 GTTG-TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCT 330229 Query 138599 TTACAAAAATCTGCATGGCT 138618 | || || ||||||||| || Sbjct 330228 TGACGAAGATCTGCATGCCT 330209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| ||||| | || || ||||||||| || || || | Sbjct 329609 GACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCG 329550 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | |||||| ||||| || || || ||||| ||||| ||| | || | || | Sbjct 329549 AAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCC-TGAATCTTCGCCTTGAC 329491 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||||||||||| | || | ||| || ||||| || || || Sbjct 329490 GTTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATCGTCTTCCCAGTGAGGGTCTT 329431 Query 138600 TACAAAAATCTGCATGGCTTATAATA 138625 ||||| ||||||||| | ||||||| Sbjct 329430 CACAAAGATCTGCATGTC-TATAATA 329406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138409 AAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGT 138468 ||||| | | | |||||||| |||||||| ||||| | || || ||| ||||| Sbjct 329908 AAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGC 329849 Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528 || || || | |||| | ||||| ||||| || || || || || ||||| ||| Sbjct 329848 TGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 329789 Query 138529 TTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 || || | | || | ||||| | ||||||||||||| ||| | ||| || ||| Sbjct 329788 TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCA 329729 Query 138589 GTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || || || || ||||||||| || Sbjct 329728 GTCAACGTCTTCACGAAGATCTGCATGCCT 329699 >seq3 Length=2894765 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || || || | |||| | |||||||| || || ||||||| |||||||||||||| Sbjct 1867541 GCCCTTCCTGTAGGGCTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTT 1867482 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || || ||||||||| | | ||||| |||| ||| |||||| || || Sbjct 1867481 GTTGCAGATCGTCTGCTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCC 1867422 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTG-AGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || |||||| ||| || || |||| |||| ||||||||||| || |||||||| || Sbjct 1867421 TTCGACTTTATGGACATGATCTC-CTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1867363 >seq1 Length=3243340 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || || | | Sbjct 2261050 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCA 2260991 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || |||||||| ||||| || || || || || || ||| || ||| | Sbjct 2260990 AAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACA 2260931 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| ||||| | || | || || |||||||| ||||| Sbjct 2260930 TTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTC 2260871 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2260870 ACAAAGATCTGCAT 2260857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| ||| | ||| ||| ||||| | || || || | Sbjct 2260765 GACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCG 2260706 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | || || ||||| ||||| || ||||| ||||| ||| | || | || | Sbjct 2260705 AAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTTCAC 2260647 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||| | ||||| ||||||| || | ||| || || |||| || | Sbjct 2260646 GTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCT 2260588 Query 138599 TTACAAAAATCTGCATG 138615 |||| |||||||||||| Sbjct 2260587 TTACGAAAATCTGCATG 2260571 >seq5 Length=2077621 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 154283 CAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGC 154342 || ||||||||| | || ||| ||| || | || ||||| ||||| || || || Sbjct 447023 CAGGAAACACGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGC 446964 Query 154343 GTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATC 154402 ||| || || || ||| | | ||| ||||| || ||| |||| |||| | Sbjct 446963 GTGAGTGAAGTAACGTTCAGACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGC 446904 Query 154403 GCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||| || |||||||||| ||||||||| |||||||| ||||| Sbjct 446903 GCCGTGAATGCCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCTGCGAC 446850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262313154080