Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 129 7e-25 >seq3 Length=2894765 Score = 129 bits (142), Expect = 7e-25 Identities = 338/506 (67%), Gaps = 15/506 (3%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||||||||| |||||||||||| |||||| || || |||||||| || |||||| Sbjct 1867713 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1867772 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||||||||| || | || || || |||||||| || ||||||||| ||||| Sbjct 1867773 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1867832 Query 127658 GCAAATAGACGCTCGGCAAA---GGAGCGGGAC-TTTGTATCAAACCACTTCATCGCCCA 127713 || | || ||||| ||||| ||||| ||| | | | | ||| | ||||| Sbjct 1867833 GCGACTAATCGCTCAGCAAATGTGGAGC--GACGATCGGA--GATCCAGCGTAGTGCCCA 1867888 Query 127714 CTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTT 127772 | ||||| | | || ||| || | ||||| | || ||||| || | || | || Sbjct 1867889 GTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCAAAAAGGTACTCGCGTTG 1867948 Query 127773 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTT 127832 || | || || |||||||| |||| || || || || || |||| ||||| ||| Sbjct 1867949 CTTA-GGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTT 1868007 Query 127833 -CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 127891 ||| || || || ||||||| | ||||| || ||| ||||| | | Sbjct 1868008 CCATCAT-AATTTGGAACCCGTAGAAGCAACGCGCCTCAGCCGCCTGAACCTCGTTCGAG 1868066 Query 127892 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 127951 || | | | ||||| || || ||||| || ||||||||||||| |||| | Sbjct 1868067 AAGCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCAAAAAACGCGAGGACA 1868126 Query 127952 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCTTT 128008 | | | || | | ||||| ||||| | || | |||||||||| |||||| ||| Sbjct 1868127 TGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCGGTTATTCCAGTCGTGGAGATCTTTT 1868186 Query 128009 GAGAGATCTACCTCCTCCGCAGTCCA 128034 || || || | || || || ||||| Sbjct 1868187 GACAGGTCCATTTCTTCGGCGGTCCA 1868212 Score = 93.3 bits (102), Expect = 5e-14 Identities = 346/527 (66%), Gaps = 19/527 (4%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| | || ||||| || || ||||| || || ||| | ||| Sbjct 1870017 GCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCA 1869958 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| || ||||||| |||||| || | | ||| || || |||||||||||| Sbjct 1869957 GGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATC 1869898 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA--- 127696 || || || |||||||| | | | | |||||| | | | ||| |||| Sbjct 1869897 CCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAA--CGTCGATCGTTG-ATCAGAG 1869841 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | |||| | | ||||||| | ||| | || || ||||| | |||| ||||| | Sbjct 1869840 ATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTG 1869781 Query 127757 AAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 ||||| | | | |||| | || ||||| |||| ||||| || ||||| Sbjct 1869780 AAGAGGAAGTCACGCTGCTGA-GAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTATGT 1869722 Query 127816 TTCGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC-GCTT 127873 ||| ||| | ||| ||| || | ||| | | || ||| |||| |||| || Sbjct 1869721 TTCCGAGTGAATGTTTTCCATCAT-GATCTGGAATCCATAAAAACAGCGGACTTCAGCGG 1869663 Query 127874 ATCTGTACCTC-ATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACC 127931 | ||||| || ||| |||| | | | |||||| ||||| || ||||| Sbjct 1869662 CT-TGTACTTCGCTCG--AAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAG 1869606 Query 127932 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCT 127988 | |||||||||||||||| ||| |||||| | |||| || || |||||| | | Sbjct 1869605 CGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTTATTGT 1869546 Query 127989 TCCAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035 |||||||| || ||| || || | ||| | ||| || | |||||| Sbjct 1869545 TCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAA 1869499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507092636240