Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq1 105 4e-18 >seq6 Length=2246423 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||||| || ||||| || || ||||| || ||| | || | || || Sbjct 330698 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTC 330639 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || || || |||||||| | || | ||| |||||||| Sbjct 330638 GAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 330579 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| ||||| || | ||||| | ||| | ||| || |||| || || | Sbjct 330578 AATCTTCGCCTTGAC--AT--TGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTG 330523 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||| ||||| |||||||||||||| Sbjct 330522 TCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 330489 Score = 107 bits (118), Expect = 1e-18 Identities = 162/226 (72%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 34764 AACCTCAAA---ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCT 34819 ||||||||| ||| || |||| || || ||||| |||||||||||||||||| | Sbjct 329637 AACCTCAAACGCACCGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGT 329578 Query 34820 TCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCC 34879 || | || || ||||| || || || || || | || |||||||| | || | || Sbjct 329577 GCGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCC 329518 Query 34880 CTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACAT 34935 |||||||| ||||||| ||||| | ||||||| | ||| | ||| || | Sbjct 329517 TTCCTTGTCCTGAATCTTCGCCTTGAC----GTTATCGATGGTGTCCGAAGACTCCACCT 329462 Query 34936 CGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | | ||| || || || || ||||| |||||||||||||||||||| Sbjct 329461 CAAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 329416 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| |||||| | || | || || ||||| || || || || Sbjct 329893 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 329834 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 329833 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 329774 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || ||||| || | |||||||| Sbjct 329773 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 329714 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 329713 AAGATCTGCAT 329703 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||||||||| | ||| |||| || || || || ||||| || Sbjct 330403 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAA 330344 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 330343 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 330284 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || || || || || ||||| || Sbjct 330283 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACG 330224 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 330223 AAGATCTGCAT 330213 >seq1 Length=3243340 Score = 105 bits (116), Expect = 4e-18 Identities = 147/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| |||||||||||||| || |||||||| | || | || |||| || || || Sbjct 2261281 GTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCC 2261222 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || ||||||||||| |||| | || |||||||| ||||||| || Sbjct 2261221 GCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTC 2261162 Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || ||||||| | ||| | ||| || || | || || || || || ||||| Sbjct 2261161 AC--AT--TATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCTGTGAG 2261106 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||||||| Sbjct 2261105 GGTCTTGACGAAGATCTGCATA 2261084 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| Sbjct 2261047 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAA 2260988 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || || || | || | |||||||| || |||||| |||||| || Sbjct 2260987 ATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGAC--AT 2260930 Query 34911 GCTATCGATTCAC-CGGCC---TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||||||| ||| | || || || | ||| ||||| || || || || || || Sbjct 2260929 --TATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTT 2260872 Query 34967 CACAAAGATCTGCATA 34982 |||||||||||||||| Sbjct 2260871 CACAAAGATCTGCATA 2260856 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || ||||| | || |||| || |||||||| || || || Sbjct 2260482 TCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2260423 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| ||||| || Sbjct 2260422 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGAC--AT 2260365 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | || ||||| || ||||| | ||||| Sbjct 2260364 --TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTT 2260307 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 2260306 GACGAAGATCTGCAT 2260292 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || || || |||| |||| |||| ||| ||||| || || Sbjct 2260762 TCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2260703 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||| |||||||| ||||||| || ||| Sbjct 2260702 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2260643 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| || || || || || || | ||||| || Sbjct 2260642 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCTTTACG 2260583 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2260582 AAAATCTGCAT 2260572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633544609392