Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 206 3e-48 >seq3 Length=2894765 Score = 206 bits (228), Expect = 3e-48 Identities = 397/580 (68%), Gaps = 9/580 (2%) Strand=Plus/Minus Query 18941 GAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCA 19000 ||||||| | |||| | ||| |||||||| || | || ||||| | ||| |||| Sbjct 1870040 GAAGATGACTGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCA 1869981 Query 19001 ATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAG 19060 ||| |||||||| |||||||||||||| || |||| ||| || | |||||| || |||| Sbjct 1869980 GTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAG 1869921 Query 19061 CAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120 |||| ||||| || ||||| || |||||||| ||||| || || || | || || Sbjct 1869920 CAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCA- 1869862 Query 19121 AACTAGCATCATT-ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179 ||| ||| || || | ||||| | || ||||| || | ||||| || || ||| Sbjct 1869861 AACGTCGATCGTTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCAT 1869802 Query 19180 GGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCA 19239 || || ||||| || ||||| || || | ||||| | | || || || | | Sbjct 1869801 GGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTA 1869742 Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || || | | | ||| |||| || ||||| ||||| || ||||| ||||| ||| Sbjct 1869741 TCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAA 1869682 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 ||||| | |||| | |||||||| || |||| | || |||| ||| || || Sbjct 1869681 AAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTG 1869622 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCA 19416 || || || || ||| |||||||| || | |||| | || |||| ||| | | Sbjct 1869621 ACAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTA 1869562 Query 19417 TC--TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTG 19474 || | |||||| || ||||| || |||||||| || | ||| | ||||| | Sbjct 1869561 TCATTCAGGTTATTG--TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACG 1869504 Query 19475 TCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||||||| ||||||| ||||| || ||||| | ||| || Sbjct 1869503 TCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1869464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108701630960