Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-20 seq7 109 9e-18 >seq3 Length=2894765 Score = 118 bits (130), Expect = 2e-20 Identities = 222/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| |||||||| | ||| ||| ||| ||| || ||||||||||| |||||| Sbjct 1867713 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1867772 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| | |||| || ||||| || |||||||| || ||||| ||| Sbjct 1867773 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1867832 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| | ||||| ||||| ||| | | || | |||||| | ||||| Sbjct 1867833 GCGACTAATCGCTCAGCAAATGTGGAGCGACGATC---GGAGATCCAGCGTAGTGCCCAG 1867889 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | | || |||| | || || | || ||| |||| || | Sbjct 1867890 TCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCAAAAAGGTACTCGCGTTGC 1867949 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||||| ||| || ||||| || || ||||||||||| |||||| ||||| Sbjct 1867950 TTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCC 1868009 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||| || || ||||| Sbjct 1868010 ATCATAATTTGGAACCCGTAGAAGCA 1868035 Score = 96.9 bits (106), Expect = 5e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 793890 GTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCG 793949 ||||| || ||||| | || || || ||| ||| || ||||||||||| |||| Sbjct 1867336 GTGACACCGGCCTTCGAGTAATCCGATACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGC 1867395 Query 793950 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCG 794009 | ||||||| ||||| | ||| ||||| | || ||||||||| |||| ||| Sbjct 1867396 AAGGAGATCATGTCCATAAAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTTTTCGCCACCG 1867455 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 || | ||||| || || || || || || ||||||||||||||||| ||| ||| Sbjct 1867456 AGGGCAATGAGCAGACGATCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTC 1867515 Query 794070 ATGCCGATGAGCGCCACGGGCAG 794092 ||||| || ||| | || || || Sbjct 1867516 ATGCCAATCAGCCCTACAGGAAG 1867538 Score = 87.8 bits (96), Expect = 3e-11 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 793885 TCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGC 793944 |||||| || ||| |||| ||| ||| || || ||| || ||||||||||| | Sbjct 1870378 TCGATGCTACATGCGCTTTGGAATAATCGGAGACCCGTTTCTCAAAGAAGTTGGTCTTTC 1870319 Query 793945 CCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC 794004 ||| || || |||| ||||| | ||| || |||| | || ||||| | Sbjct 1870318 CCTGAAGGGAAATCATTTCCATGAATTCGAATGGATTGGTGGAATTATAATGCTTGGAGT 1870259 Query 794005 ACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGG 794064 || || || |||||||||| || ||||| ||||| ||||| || | ||| ||||||| Sbjct 1870258 TTCCAAGAGAGACAAGCAGGCGATCAGCGACAAATTCTATGTATTGACGCATCAGGGCGG 1870199 Query 794065 CGTTCATGCCGATGAG 794080 | ||||| |||||||| Sbjct 1870198 CATTCATTCCGATGAG 1870183 >seq7 Length=1707658 Score = 109 bits (120), Expect = 9e-18 Identities = 236/345 (68%), Gaps = 11/345 (3%) Strand=Plus/Minus Query 2175024 AAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGA--GCGCCGTTGCCACGCTGCCGT 2175081 |||| ||| || | | || | ||||| ||| |||| ||| || | |||||||||| Sbjct 1014654 AAGGCGTGCGGATTTGAGGATGAGCGCATGGCGTCGACGGCGACGGAG--ACGCTGCCGT 1014597 Query 2175082 CGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCT 2175141 |||| || ||||| ||||||| || || | | |||| || | ||||||||| | || Sbjct 1014596 CGGTCCCATTTTTGAACCCGATGGGGAAGGAGACACCCGAGGCGAGTTCGCGGTGGAGCT 1014537 Query 2175142 GGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCG 2175201 | ||||||||| |||||||| | ||||||||| | || ||| || || | || ||| Sbjct 1014536 GAGACTCGGTGGTACGCGCGCCGATGGCGCCCCAGGACATGAGATCGGCAATGTACTGCG 1014477 Query 2175202 CCACCAAAGGGCTGAGAAACTCGACAGCC-ACGGGCTGGCCGACGTCGACGACCAGGTCG 2175260 | | | | || | |||| |||| || || ||||| |||| | |||||| Sbjct 1014476 GCGAGATGGTGTCAAGCAGCTCG-GAGCCGACTGGGACGCCGAGGTCGGTG---AGGTCG 1014421 Query 2175261 CGCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTC 2175319 | || || | || | | |||| ||||| | | || | || ||||||| ||| Sbjct 1014420 CAGAGGAGCTGGCG-GGCGAGGCGCAGGCCCTTGTTGATCTGGAAAGAGCCGTCGATGTC 1014362 Query 2175320 GGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTT 2175364 ||| || || ||||| ||||| ||||||||||||||||| || Sbjct 1014361 GGGATCATTGATGAGGCCTTTCCAGCCGACGGTCGTGCGCGGTTT 1014317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244910756146