Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-33 >seq3 Length=2894765 Score = 161 bits (178), Expect = 1e-33 Identities = 305/442 (69%), Gaps = 5/442 (1%) Strand=Plus/Minus Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 |||| | ||||| || || || ||| |||||||| |||||| || ||| ||||| | Sbjct 1868153 CGACAATGAGCGTCACTTTGTCTCGCATGTCCTCGCGTTTTTT-GCTGCCTCTGATGGTA 1868095 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 |||| ||||||||| | | ||||| ||| ||||| || | | ||||| |||| Sbjct 1868094 TCGTCAACGAGAACCTTGTTGAGCGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTT 1868035 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||||||||| || || ||||| |||||| || |||||||| || || | Sbjct 1868034 GCTTCTACGGGTTCCAAATTATGATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTA 1867975 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 |||| || ||| |||||||||| | || |||| ||| || | || || Sbjct 1867974 TCGATACTTACATCAAGGACCCTAAGCAACGCGAGTACCTTTTTGATGCTGTTGAGACCA 1867915 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 | || | || | | ||||| |||||||| | |||||| | | | ||| Sbjct 1867914 TTCCCTGTGTCAAAAGGAAGGCGGACTGGGCACTACGCTGGATCTCCGA-TCGTCGCTCC 1867856 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAG 1456227 ||| ||||| ||||| | |||| ||| ||||| || |||||||| || ||||| || Sbjct 1867855 ACA-TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTC 1867797 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCA 1456287 |||| | | ||||| ||| | |||||||| ||||||||||| || | || ||| || Sbjct 1867796 TTTCGCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGAC-TCACCTTCTCCA 1867738 Query 1456288 ACGAATTTATCAGTCGCGACGA 1456309 | ||| | |||||||| ||||| Sbjct 1867737 ATGAACTCATCAGTCGTGACGA 1867716 Score = 129 bits (142), Expect = 8e-24 Identities = 367/550 (67%), Gaps = 27/550 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| | |||| || |||| || |||||||| |||| ||| |||| Sbjct 1869463 GATTTGGCAGATGTACAAGAAAGCCC-AGGCTTCGTTTTGGACGTCCGAAGAGATCGATA 1869521 Query 1455835 TCGGCGCCGACACGGTCCACTGGG----TGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | || ||||| | | |||| || |||| ||||||||||| Sbjct 1869522 TGTCCAAAGATATCTTCGACTGGAACAATAAC-CTGAATGATAACGAACGCCATTTCATA 1869580 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 | ||||| || |||||| ||||| ||| || || || |||||| |||| | Sbjct 1869581 TCATATGTCCTGGCGTTTTTT-GCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1869639 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || ||| || || || ||| | || | || | ||||| || ||||||||| Sbjct 1869640 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCAT 1869699 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || |||||||| ||||| ||||| ||||| ||||| ||||| |||||| | ||| | Sbjct 1869700 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTC 1869759 Query 1456071 GGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || || || ||| |||||| | ||||| || | || | || | | | || Sbjct 1869760 --TC-AGCAGCGTGACTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAA 1869816 Query 1456128 GGCCGACTGGGCGATGAAGTGGATC----AACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 | |||| ||||| | | ||||||| | ||| || ||||| |||||| | | Sbjct 1869817 GACCGAGTGGGCCCTCAGGTGGATCTCTGATCAACGA-----TCGAC-GTTTGCCACGAG 1869870 Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCT 1456241 | | || | || || || || || || ||||| ||||| || | || ||| | |||| Sbjct 1869871 GTTGGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGG-ATCTTTTGCTTCAATCT 1869929 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | ||||| ||||| || || |||||||| ||| || |||| |||||| | || ||| Sbjct 1869930 TCTGGCTGAAGAAACGAGGTCTCATGCCTGGT-TTAACCTTTTCTAACGAACTGATTAGT 1869988 Query 1456302 CGCGACGAAG 1456311 || ||||||| Sbjct 1869989 CGGGACGAAG 1869998 Score = 105 bits (116), Expect = 1e-16 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || || | ||| || |||||||| |||| |||||||||||||||||| || ||| | Sbjct 1867538 CTTCCTGTAGGGCTGATTGGCATGAATGCCAA-GCTCATGTGCCAGTACATCGAGTTT-G 1867481 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 | || || || |||||| || ||||| ||| | ||||||||| || | ||||| Sbjct 1867480 TTGCAGATCGTCTGCTCATTGCCCTCGGTGGCGAA-AAGCACTACAACGCGACAAACCCC 1867422 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG 1456750 ||| | ||||| ||||||| | |||| ||||||||||| || ||| || || Sbjct 1867421 TTCGACTTTATGGACATGATCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGTA 1867362 Query 1456751 GC-GAGTACGCCAAGGCCGGCGTCACCGC 1456778 | || ||| | |||||||| ||||| || Sbjct 1867361 TCGGATTACTCGAAGGCCGGTGTCACGGC 1867333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809849674268