Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 seq5 84.2 3e-11 >seq3 Length=2894765 Score = 178 bits (196), Expect = 2e-39 Identities = 364/537 (68%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || || | |||||| | |||||||||||| || | |||||||| ||||| || || Sbjct 1869999 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1869940 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || ||||| || || | |||||||||||| || |||||||| |||||||| ||||| || Sbjct 1869939 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAAC 1869880 Query 39758 GCAACAAGTCTC-TCTC---CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATC 39813 || || | ||| | | ||| | || | || | |||||| | | ||||| || Sbjct 1869879 GCCACCAACCTCGTGGCAAACGTCGATCGT-TGATCAGAGATCCACCTGAGGGCCCACTC 1869821 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 | |||| ||| || || || || || || || | ||| ||||| | | | | Sbjct 1869820 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTG 1869761 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | || || || ||||| || | ||| || |||| || || |||||||| || Sbjct 1869760 AGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1869701 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 | ||||| ||||| |||||||| | |||||| |||||| || |||| | Sbjct 1869700 CATGATCTGGAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1869641 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 ||| ||| ||| || || || || || || |||||||||||| |||| |||| | Sbjct 1869640 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATATGA 1869581 Query 40054 AATAAAATATTTTTCATCGGGTGTCAATTTA---TTCCAGTCATTGATATCTTTTGATAT 40110 || |||| ||| | ||| ||| |||||||| ||||||||| || || Sbjct 1869580 TATGAAATGGCGTTCGTTATCATTCAGGTTATTGTTCCAGTCGAAGATATCTTTGGACAT 1869521 Query 40111 ATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 ||| | ||||| | ||||||||||| |||| || || |||||||| | ||| || Sbjct 1869520 ATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1869464 Score = 118 bits (130), Expect = 1e-21 Identities = 369/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| ||||| |||||||| ||| | ||||| || | ||| || | ||| || || Sbjct 1867683 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1867742 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||||||||| || |||||||| || | ||| || || | || ||||| || Sbjct 1867743 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1867802 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786 || ||||| ||||| || || || || || || || | || ||| | || || | | Sbjct 1867803 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGC-AAATGTGGAGCG 1867861 Query 39787 ---ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || ||||| ||||||| || || ||| | || ||||| || || || || Sbjct 1867862 ACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTC 1867921 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 | ||||| ||| || || | || | | || || | || ||||| || | || Sbjct 1867922 AACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAG 1867981 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | || ||||| ||||| ||| || || || ||||| || || | || Sbjct 1867982 GGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGC 1868041 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 |||| || ||||| | || | || | | || || || || || ||||| Sbjct 1868042 CTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATC 1868101 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA--- 40080 | || |||||||| || | ||||| | ||| | |||| | || || Sbjct 1868102 AGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGC 1868160 Query 40081 -TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 ||||||||||| | || ||||||||| | || | |||||| || ||||| || |||| Sbjct 1868161 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1868220 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 | || || || |||||||| | ||| || Sbjct 1868221 CTTCAGCTTTCTTGTACATTTGCCAGAT 1868248 >seq5 Length=2077621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 ||| | || ||||| || |||| || || || || || ||| | || ||| | | Sbjct 447139 CCTGTAGCCCGAATGTTGTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATA 447080 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 ||||| |||| || ||||| || ||||| ||| || ||| ||||| || || Sbjct 447079 GCACAGTTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGG 447020 Query 69964 AAACAGCTAGA-CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 ||||| | || || |||| ||| || ||||| || || | ||| || || ||||| Sbjct 447019 AAACA-CGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTG 446961 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACT 70081 |||||| | |||||| | || ||||| ||||||||||| || | ||| | | Sbjct 446960 AGTGAAGTAACGTTCAGACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCC 446901 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 | ||||| || | || || ||||| | ||| ||||| || |||||| Sbjct 446900 G-TGAATGCCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCT 446855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908679790960