Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 170 2e-37 >seq3 Length=2894765 Score = 170 bits (188), Expect = 2e-37 Identities = 394/579 (68%), Gaps = 35/579 (6%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| ||||| ||||| || |||||||| | ||||| | ||| || Sbjct 1869464 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1869523 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAA-AACCACAAGAAAAAC-------ATTTTA 43841 | ||||| || | || || || | || |||| || | ||| |||| | Sbjct 1869524 TCCAAAGA--TATC---TTCGACTGGAACAATAACCTGAATGATAACGAACGCCATTTCA 1869578 Query 43842 TATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTA 43901 |||| | || ||||||||||||| || |||||| || ||||| || ||| |||| Sbjct 1869579 TATCATATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGG 1869638 Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961 |||||| || ||||| ||| | |||| || ||||||||||| || || || Sbjct 1869639 AGCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCA 1869698 Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA-- 44019 || ||||| ||||| ||||||| ||| ||| || || ||||| ||||| || Sbjct 1869699 TGATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACT 1869758 Query 44020 -TGGGCA-CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACA 44076 | ||| || || | || | || ||| |||| || || |||| |||| | || || Sbjct 1869759 CTCAGCAGCGTGA--CTTC--CTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCA 1869813 Query 44077 TAAAGCAGACTGGGCCCTTAAATGGATAAAT--TCAAATGAT--TCTTTTGGAGAACGA- 44131 || | || |||||||| | ||||| | || || ||| | |||| |||| Sbjct 1869814 GAAGACCGAGTGGGCCCTCAGGTGGATCTCTGATC-AACGATCGACGTTTG--CCACGAG 1869870 Query 44132 -CTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190 | || ||||| |||| || ||||| || ||||| || ||||| ||||| | || || Sbjct 1869871 GTTGGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTT 1869930 Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250 ||| | |||||||||||| | |||||||| || || ||||| || || | || ||||| Sbjct 1869931 CTGGCTGAAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCG 1869990 Query 44251 TGATGAAGGCTTACATTGCGATTTTGCTTG---CTTGTT 44286 || ||||| | || |||||||| || |||||| Sbjct 1869991 GGACGAAGGGATGCACACAGATTTTGCCTGTCTCTTGTT 1870029 Score = 123 bits (136), Expect = 2e-23 Identities = 379/573 (66%), Gaps = 26/573 (5%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||| ||||| | ||||| || ||||| || |||||| | || || Sbjct 1868248 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1868189 Query 43790 ACTAAAGACTTAGCAC-ATTGGATT----GCATTAAAACCACAA-GAAAAACATTTTATA 43843 | ||||| | ||| | |||| | || |||| | |||| || || ||| | Sbjct 1868188 TCAAAAGATCTC-CACGACTGGAATAACCGCCTTAA--CGACAATGAGCGTCACTTTGTC 1868132 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || | |||||||||||||| || || || ||||| || || | ||| Sbjct 1868131 TCGCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAG 1868072 Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || || || | || ||||| | || || || || || || ||||| |||||| Sbjct 1868071 CGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1868012 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---T 44020 || |||||||| || || | ||| ||||| || ||||| |||||||| || | Sbjct 1868011 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1867952 Query 44021 GGGCA-CGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATA 44078 ||| || || | | | | ||| |||| | || || | | |||| | | ||| | Sbjct 1867951 AAGCAACGCGA-GTACC---TTTTTGATGCTGTTGAGACCATTCCCTGTG-TCAAAAGGA 1867897 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT-----TTTGGAGAACGACT 44133 | || |||||||| || ||||| | | | | || |||| || ||| | Sbjct 1867896 AGGCGGACTGGGCACTACGCTGGATC--TCCGATCGTCGCTCCACATTTGCTGAGCGATT 1867839 Query 44134 TGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTG 44193 ||||| || || | |||||| ||||||||||| || || || || || | || || || Sbjct 1867838 AGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTG 1867779 Query 44194 GTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGA 44253 ||| ||||| || || | |||||||| | || || || ||||| | || |||||||| Sbjct 1867778 GTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGA 1867719 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || | ||| ||| || || |||||||| Sbjct 1867718 CGAGGGAATGCATACCGACTTCGCATGCTTGTT 1867686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455932184070