Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 120 4e-22 seq1 87.8 2e-12 >seq3 Length=2894765 Score = 120 bits (132), Expect = 4e-22 Identities = 336/506 (66%), Gaps = 15/506 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||||||||| |||||||||||| |||||| || || |||||||| || |||||| Sbjct 1867713 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1867772 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 ||||||||||| || | || || || |||||||| || ||||||||| ||||| Sbjct 1867773 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1867832 Query 130154 GCAAAGAGACGCTCAGCAAA---GGAGCGGGAC-TTTGTATCAAACCACTTCATCGCCCA 130209 || | | ||||||||||| ||||| ||| | | | | ||| | ||||| Sbjct 1867833 GCGACTAATCGCTCAGCAAATGTGGAGC--GACGATCGGA--GATCCAGCGTAGTGCCCA 1867888 Query 130210 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTT 130268 | |||||| | | || ||| || | ||||| | || ||||| || | || | || Sbjct 1867889 GTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCAAAAAGGTACTCGCGTTG 1867948 Query 130269 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTT 130328 || | || || |||||||| |||| || || || || || |||| |||| ||| Sbjct 1867949 CTTA-GGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTT 1868007 Query 130329 -CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCA 130387 ||| || || || ||||||| | ||||| || ||| ||||| | | Sbjct 1868008 CCATCAT-AATTTGGAACCCGTAGAAGCAACGCGCCTCAGCCGCCTGAACCTCGTTCGAG 1868066 Query 130388 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 130447 || | | | ||||| || || ||||| || ||||||||||||| |||| | Sbjct 1868067 AAGCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGCAGCAAAAAACGCGAGGACA 1868126 Query 130448 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTC 130504 | | | || | | ||||| ||||| | || | |||||||||| ||||| || Sbjct 1868127 TGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCGGTTATTCCAGTCGTGGAGATCTTTT 1868186 Query 130505 GAGAGATCTACCTCCTCCGCAGTCCA 130530 || || || | || || || ||||| Sbjct 1868187 GACAGGTCCATTTCTTCGGCGGTCCA 1868212 >seq1 Length=3243340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/324 (67%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 14151 CAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 |||| ||||||||||| | |||| || || |||| || ||||| || || ||| || Sbjct 2072037 CAAAACCATCCATCTC-GACAAGGAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTCCCA 2072095 Query 14210 GGCATA---CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 ||| || ||| | |||| |||||| | ||||||||||||||||||||| | | Sbjct 2072096 CCCATGTTGCCTCCCTTTCCGCGTGACTTACCAATGGCGTCAATTTCATCGATGAAGATG 2072155 Query 14267 ATACATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACC 14322 || || || || | ||| ||| | | || | || || || | | || ||| Sbjct 2072156 ATGCAAGGGGCATTTTTCTTCGCGGAC----GCGAAAAGGTCGCGTACACGCGAGGAACC 2072211 Query 14323 GACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGA 14382 ||||| || |||||||| || || | || |||| || ||| |||||| | | Sbjct 2072212 AACACCGACGAACATCTCGACGAATTCGGAACCGGAGACGGAGAGGAAAGGGACGCTCGC 2072271 Query 14383 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAG 14442 ||| || ||| |||| || || | ||||| ||||| || || || | ||| | Sbjct 2072272 TTCGCCGGCGGTGGCCTTAGCAAGTAACGTCTTTCCCGTACCAGGAGGTCCGGAGAGGAT 2072331 Query 14443 GGCACCACGTGGGATCCTGGCACC 14466 |||||| || |||||| | || || Sbjct 2072332 GGCACCGCGAGGGATCTTAGCCCC 2072355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435091773840