Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 150 5e-31 seq6 123 8e-23 seq2 118 3e-21 >seq1 Length=3243340 Score = 150 bits (166), Expect = 5e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || |||||||||||||| ||||| || ||||| || | ||||||||||| || | Sbjct 2260779 CAAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2260720 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || |||||||| ||||| | |||||||| || |||||||| ||||| || ||||||| Sbjct 2260719 ACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 2260660 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || ||||| | || || | || || || || || | ||||| | Sbjct 2260659 TCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCC 2260600 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || ||||| ||||||||||| Sbjct 2260599 CTGTCAAGGTCTTTACGAAAATCTGCAT 2260572 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || ||||| ||||| || || || || || || || ||||| ||||| || ||||| || Sbjct 2260272 ACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTACGGCCATCCTCG 2260213 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAAT 140632 || ||||||||||| || || |||||||| || || |||||||| Sbjct 2260212 AGCTGTTTTCCAGCGAAAATGAGACGTTGTTGGTCGGGAGGAAT 2260169 >seq6 Length=2246423 Score = 123 bits (136), Expect = 8e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||||||||| ||||| || || ||||| || || || | || || ||||| || ||| Sbjct 330418 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 330359 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || || || || || || ||||| ||||| || || || || || |||||||| Sbjct 330358 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 330299 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || || |||| ||||| | || || || || || | ||||| ||| Sbjct 330298 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCG 330239 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || |||||||| Sbjct 330238 GTCAGGGTCTTGACGAAGATCTGCAT 330213 Score = 120 bits (132), Expect = 9e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||||||||| ||||| || || || ||||| || || | || || || || || || Sbjct 329621 AGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 329562 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || || || || | ||| ||||| || || || |||||||| || |||||||| Sbjct 329561 TGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 329502 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || ||||| || | || || | || || ||||| || | ||||| || Sbjct 329501 TTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATCGTCTTCCCA 329442 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| |||||||| Sbjct 329441 GTGAGGGTCTTCACAAAGATCTGCAT 329416 >seq2 Length=2778437 Score = 118 bits (130), Expect = 3e-21 Identities = 269/401 (67%), Gaps = 3/401 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||| || || || |||||| | | || |||||||| | ||||| | || | Sbjct 1448647 CCCGAAGAGATCTCCTCGATGGTTCTCTTGAAGATGAAGGAGACCGCTGAGTCCTACCTC 1448706 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || || || | || || | || || || || || ||||| || | ||||| Sbjct 1448707 GGCACGACCGTCACGAACGCCGTCGTGACGGTCCCCGCGTACTTTAACGACTCGCAGCGC 1448766 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | |||| | || | || | || | || || || || Sbjct 1448767 CAGGCTACCAAGGACGCCGGAACCATTTCCGGAATGAACATCCTTCGTATCATCAACGAG 1448826 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTAT 349770 ||||| ||||| || ||||| || || || || || | | |||||| || || | Sbjct 1448827 CCCACCGCTGCCGCCATTGCGTACGGTCTCGACAAGAAG-GTGACCGGCGAGCGCAACGT 1448885 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 || || || ||| | || || || ||||| ||||| ||||| || || | || ||||| Sbjct 1448886 CCTCATCTTCGATCTCGGAGGAGGAACTTTCGATGTGTCACTTCTTACCATCGAGGAGGG 1448945 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || || || || ||||||||||| || || | ||||| || || ||||| || Sbjct 1448946 TATCTTCGAGGTCAAGGCCACTGCTGGTGACACCCACTTGGGTGGTGAGGACTTTGACAA 1449005 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 || ||||| || ||||| | || || ||||| |||| Sbjct 1449006 CCGCCTCGTGAACCACTTTGTCCAGGAGTTCAAGCG-CAAG 1449045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254128201242