Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 114 8e-21 seq1 100 2e-16 >seq6 Length=2246423 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 |||||||||| || |||||| ||||||||||| || ||||| || || ||||||| | Sbjct 329910 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 329851 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 | || || || || || || || ||||| ||||| || || | ||||||||||| || Sbjct 329850 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 329791 Query 34619 TCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || || | || ||| || || ||||| |||||| || | || ||||| || Sbjct 329790 TC-TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTT 329732 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| ||||| || ||||||||| Sbjct 329731 CCAGTCAACGTCTTCACGAAGATCTGCATG 329702 >seq1 Length=3243340 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 ||| |||||| |||||||| || |||||||| ||||| |||||||| || |||| || | Sbjct 2261292 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2261233 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 ||| || || ||||| || | || || ||||||||||| | || ||||||||| ||| Sbjct 2261232 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCT-TGA 2261174 Query 34619 TCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || | || || || || ||||| ||| || |||| || ||||| || Sbjct 2261173 ATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTG 2261114 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || |||||||| Sbjct 2261113 CCTGTGAGGGTCTTGACGAAGATCTGCAT 2261085 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | || ||||| |||||| || ||||| || || ||| Sbjct 2261083 CCGCCGCGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2261024 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || ||||| || | |||||||| ||||| || Sbjct 2261023 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2260964 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||| | ||| || || |||||||| ||| || Sbjct 2260963 ATGCCCTCCTTATCCTGGATCTTC-GCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2260905 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | ||||||||||| |||||||| Sbjct 2260904 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2260857 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 11/216 (5%) Strand=Plus/Minus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| || || |||||| || || || ||||| ||||| || ||| | || || Sbjct 2260501 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2260442 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||| |||||||| || || || | |||||| ||||| || || | ||||||||||| Sbjct 2260441 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2260382 Query 34617 GATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATC 34671 ||||| ||| || ||||| ||||| ||||||||| | || || Sbjct 2260381 AATCTTCGCCTTGACATTGTCGATA-----GTGTCCGAAGACTCCACTTCAAGAGTGATG 2260327 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || || ||||||||| Sbjct 2260326 GTCTTGCCCGTCAATGTCTTGACGAAGATCTGCATG 2260291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729546299262