Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 seq6 118 9e-22 >seq1 Length=3243340 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| |||||| | || || | || || || ||||| Sbjct 2260857 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2260916 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || || || || || ||||| ||||| |||||| Sbjct 2260917 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2260976 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || | |||| ||||||| |||||| Sbjct 2260977 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2261036 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 2261037 ATCCAGAAGGAGTCGAC 2261053 Score = 113 bits (124), Expect = 4e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||| |||||| | || |||||||||||||| | Sbjct 2260288 CGGCATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTC 2260347 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || || | ||||| || ||||| ||||| || || || || ||||| Sbjct 2260348 TTCGGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGA 2260407 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||| || ||||| | || || | || |||| ||||| Sbjct 2260408 CCAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTA 2260467 Query 27164 CAACATTCAAAAGGAGTCGACCTTACAT-TTGGT 27196 ||| || || |||||||| ||| | ||| ||||| Sbjct 2260468 CAATATCCAGAAGGAGTCTACCCTTCATCTTGGT 2260501 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||| || |||| || ||| | || ||||| || || || | || Sbjct 2260571 CATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2260630 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || ||||| ||||| ||||| || || ||||| || Sbjct 2260631 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2260690 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | ||| || || || ||||| || | || | ||||||||||| Sbjct 2260691 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2260750 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| || ||||| || Sbjct 2260751 CATTCAGAAAGAGTCTAC 2260768 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || | || || || | || Sbjct 2261085 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCG 2261144 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||||||||| |||||||| || || || || Sbjct 2261145 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2261204 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || ||||| |||||||| ||| || || |||| ||||||||| Sbjct 2261205 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2261264 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGG 27195 ||||| || ||| ||| | ||| ||| Sbjct 2261265 ATTCAGAAAGAGAGCACCCTCCATCTGG 2261292 >seq6 Length=2246423 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 26979 TTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTG 27038 ||||| | ||||||||| ||||| || || || || || ||| | || || ||||| ||| Sbjct 329408 TTATA-GACATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACGATCACCCTTGAGGTG 329466 Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098 || | || ||| | || || | ||||| || ||||| ||||| ||||| || || Sbjct 329467 GAGTCTTCGGACACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGAATCCCC 329526 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC 27158 ||||| || |||||||| || | ||| ||||| || | || ||| | ||| |||| Sbjct 329527 CCCGACCAGCAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCG 329586 Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGG 27209 || || ||||| || ||||||||||| | ||| | | |||||||| || Sbjct 329587 GACTATAACATCCAGAAGGAGTCGACTCTTCATCTCG--GTGCGTTTGAGG 329635 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || ||| | || || || || ||||| | || Sbjct 329702 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 329761 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || || ||||| || ||||| || || || || Sbjct 329762 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 329821 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | ||| ||||| || | |||||| | ||| |||| || || || Sbjct 329822 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAA 329881 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGG 27195 |||||| |||||||||||| | ||||||| Sbjct 329882 CATTCAGAAGGAGTCGACCCTCCATTTGG 329910 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || || || |||| Sbjct 330212 CATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 330271 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || ||| ||||| ||||| || || || || || || || Sbjct 330272 TGACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 330331 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| ||| | || || | || |||| || ||||| Sbjct 330332 GCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 330391 Query 27167 CATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 330392 TATCCAGAAGGAGTCGAC 330409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918323889280