Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 183 4e-41 >seq3 Length=2894765 Score = 183 bits (202), Expect = 4e-41 Identities = 385/571 (67%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| |||||||| || | ||||| || | |||||| | |||||||||| Sbjct 1870029 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1869970 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | ||| ||||| || || ||||| || ||||| || |||| || |||||||| Sbjct 1869969 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1869910 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 || ||||| || |||||||| || || || || | ||| | ||| ||| Sbjct 1869909 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTC-GTGGCAAACGTCGATCG 1869851 Query 48312 TTG----TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 ||| ||||||| | ||||| || | ||||| ||| || || || || || || Sbjct 1869850 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1869791 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCT----ATCTTTAACGTAAGTATCTATTA 48423 || | ||| ||||| ||| | | |||| || || ||| ||||| || | Sbjct 1869790 GATCGAATTGAAGAGGAAG----TCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGA 1869735 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 ||| || |||| |||||||| ||||| || ||||| ||||| |||||||| | Sbjct 1869734 GGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGC 1869675 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 |||| | | ||||| || | |||| || || ||| |||||| || || || | Sbjct 1869674 GGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATAC 1869615 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 | || ||| |||||||| || | |||| | || |||| |||||| | ||| Sbjct 1869614 CGTCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCA 1869555 Query 48604 GTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | ||| |||||||| ||||||||| || ||||| | ||||| | |||||||| | Sbjct 1869554 GGTTATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACG 1869495 Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | |||| ||||| || ||||| | ||| || Sbjct 1869494 AAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1869464 Score = 165 bits (182), Expect = 1e-35 Identities = 386/576 (67%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || ||||| || || ||| | || || || | ||| || | ||| || || Sbjct 1867683 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1867742 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || ||||| || ||||| || ||||| || || | ||| || |||| |||||||| || Sbjct 1867743 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1867802 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTG----G 48306 || ||||| ||||| || || || || || ||| ||| || ||| | || || | Sbjct 1867803 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAA---TCGCTCAGCAAATGTGGAG 1867859 Query 48307 CTTCGTTGTGT-ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 | || | | ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 1867860 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1867919 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTAT 48421 || | ||||| ||| ||| | | | ||||| || || | ||||||||| || Sbjct 1867920 TCAACAGCATCAAA----AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGAT 1867975 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | ||| || | ||| ||| |||||||| || || || || ||||| || || Sbjct 1867976 AAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCA 1868035 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | ||| || | ||| ||||| | | || || ||| | | ||||| || || || Sbjct 1868036 ACGCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGAT 1868095 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT------TTTTCGTT 48595 |||||| ||||||||||| || | ||||| | ||| | || ||||| Sbjct 1868096 ACCATCAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTT 1868155 Query 48596 GGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 ||| | ||| ||||||||| | || ||||||||| | || | |||||| || ||||| Sbjct 1868156 --AAGGCGGTT-ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCA 1868212 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || || || ||||| || ||||| | ||| || Sbjct 1868213 GAAAGACGCTTCAGCTTTCTTGTACATTTGCCAGAT 1868248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668678432960