Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457915.1_202015- 11-03] 14 sequences; 26,374,274 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 >seq3 Length=2894765 Score = 178 bits (196), Expect = 2e-39 Identities = 382/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | ||| |||||||| || | ||||| || | |||||| | |||||||||| Sbjct 1870029 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1869970 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || | |||||||| || || || || || ||||| || || | || |||||||| Sbjct 1869969 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1869910 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 || ||||| || |||||||| || ||||| || || | ||| | | | | ||| Sbjct 1869909 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCG-ATCG 1869851 Query 46801 TT-ATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 || || | |||||||| | ||||| || | ||| | ||| || || || || || || Sbjct 1869850 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1869791 Query 46857 TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAG 46916 || | ||| ||||| |||| | | | || || || ||||| || | || Sbjct 1869790 GATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAG 1869731 Query 46917 ACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGC 46976 | || |||| || ||||||||||| || ||||| ||||| |||||||| | | Sbjct 1869730 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGAC 1869671 Query 46977 TTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATC 47036 ||||| ||||| || | |||| || || || |||||| || || || || || Sbjct 1869670 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1869611 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 ||| |||||||| |||| |||| | || |||| ||| | | |||| || Sbjct 1869610 GGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1869551 Query 47097 A---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 | |||||||| ||||||||| || ||||| | ||||| | ||||| || || || Sbjct 1869550 ATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGC 1869491 Query 47154 CTCTGCTTTTTTATACATATTCCATAT 47180 || ||||| || ||||| | ||| || Sbjct 1869490 CTGGGCTTTCTTGTACATCTGCCAAAT 1869464 Score = 156 bits (172), Expect = 6e-33 Identities = 378/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| || ||||| || || ||| | || || || | ||| || | ||| || || Sbjct 1867683 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1867742 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || ||||| |||||||| || |||||||| || | ||| || || | |||||||| || Sbjct 1867743 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1867802 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 || ||||| ||||| || ||||| ||||| ||||| | || ||| | | ||| | Sbjct 1867803 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1867862 Query 46801 TTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || || ||||| | | | ||||| || ||||| | || ||||| || || || || Sbjct 1867863 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1867922 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 | ||||| ||| || | | || | | || || | || ||||| || | ||| Sbjct 1867923 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1867982 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || | || || || ||||| || || || || ||||| || || | || Sbjct 1867983 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1868042 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATC 47036 |||| ||| ||||| | | || || ||| |||| ||||| || || || ||||| Sbjct 1868043 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCA-ACAAGGTTCTCGTTGACGATACCATC 1868101 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA---TCGGTAGTCAG 47093 | ||||||||||| || | ||||| | ||| | ||| ||| || | Sbjct 1868102 AGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCG 1868161 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||||||||||| | || ||||||||| | || | |||||| || |||||||| ||||| Sbjct 1868162 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1868221 Query 47154 CTCTGCTTTTTTATACATATTCCATAT 47180 || ||||| || ||||| | ||| || Sbjct 1868222 TTCAGCTTTCTTGTACATTTGCCAGAT 1868248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934275236480