Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 163 3e-35 >seq3 Length=2984533 Score = 163 bits (180), Expect = 3e-35 Identities = 394/586 (67%), Gaps = 23/586 (4%) Strand=Plus/Plus Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004 |||||| | |||| ||||| || ||||| || | || ||||| | || || || Sbjct 1852801 AAGATGACTGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAG 1852860 Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 |||||||||||| || || || ||||| ||||||||||| | ||| || || | || Sbjct 1852861 TTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGC 1852920 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA--TCGTTCGGCG 17122 || || || || ||||| || || || || | ||| ||||| | || |||| ||| Sbjct 1852921 AAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGT--GGCA 1852978 Query 17123 TACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 |||||| || ||| | || ||||| | | ||||||||| || ||||| | ||| Sbjct 1852979 AACGTCGA-TCGTTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCA 1853037 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 || || || || | || || | || | ||| ||| || || || Sbjct 1853038 TGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGT 1853097 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 ||||||||| || ||| |||| ||||| ||||| ||||| ||||||||||| || Sbjct 1853098 ATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATA 1853157 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGT 17360 ||| || ||| |||| || ||| ||||| | || | || || ||| | ||||| |||| Sbjct 1853158 AAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAACCGCTCCACCAGATTCTCGT 1853216 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATATGCTTAATGAAATATTTTTC 17418 | || || |||||| ||||| ||||| |||| | ||||| | ||||||| ||| Sbjct 1853217 TGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGAT--ATGAAATGGCGTTC 1853274 Query 17419 G-------TCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 | || ||| || | |||||| | ||||||||| ||||| | |||| Sbjct 1853275 GTTATCATTCAGGT-TATTA---TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTT 1853330 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 ||| |||||||| |||| || || || ||||| | |||||| Sbjct 1853331 CGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545509429520