Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 140 3e-28 >seq3 Length=2984533 Score = 140 bits (154), Expect = 3e-28 Identities = 362/542 (67%), Gaps = 15/542 (3%) Strand=Plus/Plus Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 |||||||| | || || |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1852841 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1852900 Query 16283 TTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342 || | |||||| || | |||||| || || || ||||| || || || || | ||| || Sbjct 1852901 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAAC 1852960 Query 16343 GCGATTAA--TCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCAT 16399 || | || |||| || |||| | ||| || | || ||||| | | |||| Sbjct 1852961 GCCACCAACCTCGTG--GCAAACGTCG-ATCGTTGATCAGAGATCCACCTGAGGGCCCAC 1853017 Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCC 16459 |||| || || || | || || || || || | || || | || | | Sbjct 1853018 TCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGC 1853077 Query 16460 TGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCT 16519 ||| || || || ||||| || || | | ||| |||| ||||| ||||| || Sbjct 1853078 TGAGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCC 1853137 Query 16520 ATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAA 16578 || |||||||||||||| || || || | || || ||||||||| | || |||| Sbjct 1853138 ATCATGATCTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAA 1853196 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATG 16636 || ||| |||| ||||| || || |||||||| || |||||||| |||| | || Sbjct 1853197 CCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATA 1853256 Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATCTTTG 16693 || | ||||||| ||||| | | || | ||| ||| || | ||||||| Sbjct 1853257 TGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATTATTCCAGTCGAAGATATCTTTG 1853314 Query 16694 GATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAA 16753 || ||||| | ||||| | ||||||||| |||| || || || ||||| | |||| Sbjct 1853315 GACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAA 1853374 Query 16754 AT 16755 || Sbjct 1853375 AT 1853376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414310502480