Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq6 114 1e-20 seq8 84.2 2e-11 >seq1 Length=3168126 Score = 131 bits (144), Expect = 1e-25 Identities = 157/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | ||||||||||| || |||||||||||| | ||| ||| ||||| Sbjct 2212783 CACCAAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCT 2212724 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | ||| ||||||||| |||| | || ||||| |||||||| || || |||||||| Sbjct 2212723 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 2212664 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | || | ||||||| ||||||||||| || | ||| | Sbjct 2212663 GAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCT 2212604 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || |||| || ||||| |||||||||||| Sbjct 2212603 TCCCTGTCAAGGTCTTTACGAAAATCTGCATG 2212572 Score = 120 bits (132), Expect = 3e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | |||||||| || || || |||||||| | |||||| |||||| Sbjct 2212502 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2212443 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| ||||||||||| |||||||| || ||||||||||| Sbjct 2212442 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2212383 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||||| ||| || || | || | || || Sbjct 2212382 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2212323 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || || || ||||||||| Sbjct 2212322 GCCCGTCAATGTCTTGACGAAGATCTGCATG 2212292 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | || || |||||||||||| || || Sbjct 2213054 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCC 2212995 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || || ||||| ||||| || || ||||||||||| || || || ||| Sbjct 2212994 GCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTG 2212935 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||| | ||| | || ||||| ||||| ||| Sbjct 2212934 ACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2212875 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 2212874 TTCACAAAGATCTGCAT 2212858 >seq6 Length=2225400 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| || | |||||| ||||||||| || || || Sbjct 324702 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCG 324643 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||| |||||||| || || || || ||||||||||| ||| ||| || Sbjct 324642 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTC 324583 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| || | ||| ||||||||||| || Sbjct 324582 ACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTC 324523 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || || || ||||||||| || Sbjct 324522 TTGACGAAGATCTGCATGCCT 324502 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118516 CGCGTAATCTCAA---CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||| || ||||| |||| || || | || ||||| || || ||||| || || Sbjct 323935 CGCGAAACCTCAAACGCACCGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAA 323876 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||||||||| || || ||| | || | ||||||||| ||||| || Sbjct 323875 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGG 323816 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||| || || || | |||| |||||||| ||| ||| Sbjct 323815 ATTCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACC 323756 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| ||| | ||| || || || || || || || || ||||||||| || Sbjct 323755 TCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTCT 323705 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || ||| | |||||| ||||||||||| || || Sbjct 324474 GTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCC 324415 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || ||||||||||| ||| ||| || || Sbjct 324414 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 324355 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| || | ||| ||||| || || || Sbjct 324354 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 324295 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||| ||||| Sbjct 324294 TTGACGAAAATTTGCAT 324278 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || || ||||| || || ||||| ||||||||||| || || || | Sbjct 324973 CTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAA 324914 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||| |||||||| |||||||| || || |||||||| ||| || || || | Sbjct 324913 AATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATT 324854 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| ||||||||||| || | || || || || || || || || Sbjct 324853 GTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCCGTGAGGGTCTTGAC 324794 Query 118727 AAAAATCTGCAT 118738 ||| |||||||| Sbjct 324793 AAAGATCTGCAT 324782 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || |||||||| || || | ||||| || |||| Sbjct 324203 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 324144 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| |||| | |||||||| || || || |||||||||||||| | Sbjct 324143 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 324084 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||||| | ||| ||||||| || | ||| || | Sbjct 324083 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 324024 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | |||| || || || || ||||||||| || Sbjct 324023 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 323992 >seq8 Length=1768214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||||||||| ||||| |||||||| | ||||| || |||||||| Sbjct 404564 GTGGAGGGTAGACTCTTTTTGGATGTTATAATCGCTGAGGGTGCGACCGTCTTCGAGCTG 404623 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 ||||| || | || || |||||||| ||||| || |||| Sbjct 404624 CTTTCCGGCAAAAATCAGGCGCTGCTGGTCGGGTGGGATGC 404664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830325977688