Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq1 113 4e-20 seq6 109 5e-19 >seq3 Length=2984533 Score = 147 bits (162), Expect = 2e-30 Identities = 377/566 (67%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| || || | || ||||||||||| |||||| | || || Sbjct 1853376 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1853317 Query 57630 TCTAAGGATCTGAGCGATTGGGATTC---CCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| | ||| ||| || ||| || || || | |||| || | Sbjct 1853316 TCCAAAGATATCTTCGACTGGAATAATAACCTGAATGATAACGAACGCCATTTCATATCA 1853257 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 | || |||| ||||| ||||| ||||| |||||||| ||||||||| |||| || | Sbjct 1853256 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1853197 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| ||||| |||| | || | | || ||||| |||||||| | || Sbjct 1853196 TTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAGATCATGATG 1853137 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC----GTGAAGGACAA 57862 |||||| | || || |||| || || || ||||||||||| ||| ||| || Sbjct 1853136 GAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTCAG 1853077 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGG 57921 | || | || | || ||||| ||||||| || || || ||| || ||||| Sbjct 1853076 CAGCGTG--ACTT--CCTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGAAGA 1853022 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG-GCCACGTTCGCCGAGAGGCTAATC 57980 | |||||| | ||| ||||| | | ||| | ||||| ||| |||| | | Sbjct 1853021 CCGAGTGGGCCCTCAGGTGGAT-CTCTGATCAACGATCGACGTTTGCCACGAGGTTGGTG 1852963 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 |||||||| || || ||||| || ||||| || || ||||| |||| || ||| || Sbjct 1852962 GCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1852903 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 |||||||| || || ||||| || | || ||| ||||| |||| || ||||| Sbjct 1852902 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1852843 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || | || || |||||||| || || Sbjct 1852842 GGGATGCACACAGATTTTGCCTGTCT 1852817 >seq1 Length=3168126 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||||||||| ||||||| || |||||||| |||| || || | || Sbjct 2212572 CATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2212631 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || || |||||||||||| | || |||||||| Sbjct 2212632 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2212691 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || |||||||| || |||||||| || ||| | |||||| || Sbjct 2212692 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2212751 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398 ||| || ||||| || ||||| || || Sbjct 2212752 CATCCAGAAAGAGTCTACTCTGCACCT 2212778 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || ||||| | || || || | || Sbjct 2212292 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTC 2212351 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || || ||||||||| || | || |||||||| Sbjct 2212352 GGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCA 2212411 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||| |||||| | || || Sbjct 2212412 GCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGA 2212447 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| |||||||| | || || || | || Sbjct 2213086 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCG 2213145 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | ||||| |||||| Sbjct 2213146 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2213205 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| || ||||| ||| | || | ||||| ||| Sbjct 2213206 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2213265 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 ||||| ||||| || || ||||||| Sbjct 2213266 ATTCAGAAAGAGAGCACCCTCCATCTGG 2213293 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||| ||||| || |||||| | || || || ||||| Sbjct 2212858 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2212917 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| || || ||| ||||| ||| | || || || || Sbjct 2212918 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2212977 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || || ||| | ||| || ||| Sbjct 2212978 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2213037 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||||||||| || || || | || | ||||||| Sbjct 2213038 ATCCAGAAGGAGTCGACTCTTCACCTTGTCCTCCGTCTTCGCGGCGGTA 2213086 >seq6 Length=2225400 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || ||||| ||||| || || || || ||||||||| |||| || || | | Sbjct 323707 ACATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTT 323766 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 | |||| |||| | ||||| || || ||||||||| || | || ||||||| Sbjct 323767 CGGACACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACC 323826 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||| | || ||||| ||||| ||| | || ||| || | || |||| Sbjct 323827 AGCAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATA 323886 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT 31398 |||| || || || |||||||||||||| Sbjct 323887 ACATCCAGAAGGAGTCGACTCTTCATCT 323914 Score = 104 bits (114), Expect = 2e-17 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 324505 CATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 324564 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||| || | ||||| |||| Sbjct 324565 TGACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACC 324623 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||||| || || ||||| ||||| || | || || | | | ||| | || || Sbjct 324624 AGCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGA-TGGACGCACTCTTTCGGACTAC 324682 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 || || || || || |||||||||||||| ||||| Sbjct 324683 AATATCCAGAAGGAGTCGACTCTTCATCTCGGTAC 324717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || |||||||| |||| || || | || Sbjct 323995 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 324054 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 324055 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 324114 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | |||||| || | || ||||| Sbjct 324115 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAA 324174 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGG 31400 |||||| || || ||||| || ||| ||| Sbjct 324175 CATTCAGAAGGAGTCGACCCTCCATTTGG 324203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || ||||| ||||| || |||| || || | || Sbjct 324278 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 324337 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || || ||||| ||| | || || |||||| Sbjct 324338 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 324397 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || ||| ||| | ||| |||||| Sbjct 324398 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAAC 324457 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || | ||||| || ||| Sbjct 324458 ATCCAGAAGGAGTCCACCTTGCATCTCGTCCTT 324490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766321990880