Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 159 5e-34 >seq3 Length=2984533 Score = 159 bits (176), Expect = 5e-34 Identities = 377/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| ||| |||||||| ||| || | |||||||| | ||| || | ||| ||||| Sbjct 1855157 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1855098 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1855097 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1855038 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 || |||||||| || || || || || ||||| | | || ||| || | || | Sbjct 1855037 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1854978 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || ||||| | | ||||| || |||||| |||| ||||| || || ||||| Sbjct 1854977 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1854918 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 | ||||| ||| || || | || ||| || || | || ||||| || | ||| Sbjct 1854917 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1854858 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || | || || || ||||| || ||||| || |||||||| || | ||| Sbjct 1854857 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1854798 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | ||| || || | | || || || | | || || || || || || ||| Sbjct 1854797 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCA 1854738 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA----G 36621 ||| ||||||||||| | ||||| | ||| | || ||| |||| | Sbjct 1854737 GAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTC-ATTGTCGTTAAGGCG 1854679 Query 36622 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681 |||||||| || | || |||||| || | |||| |||||| | ||||| || || || Sbjct 1854678 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1854619 Query 36682 CTCTGCCTTTTTATACATATTCCAGAT 36708 || || || || ||||| | |||||| Sbjct 1854618 TTCAGCTTTCTTGTACATTTGCCAGAT 1854592 Score = 154 bits (170), Expect = 2e-32 Identities = 379/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| | ||| || ||||| ||| | || ||||| | |||||| | |||||| ||| Sbjct 1852811 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1852870 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | || ||||| || || || || || ||||| || || || ||||| ||||| Sbjct 1852871 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1852930 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGG-CA 36325 || ||||| || |||||||| || || || || | | ||| || ||| || | Sbjct 1852931 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCA-AACGTCGATCG 1852989 Query 36326 CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 || ||| |||||| | | ||||| |||| ||||| || || || || || ||||| Sbjct 1852990 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1853049 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || | ||| ||||| ||| | | | || || || ||||| || | || Sbjct 1853050 GATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAG 1853109 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 | || ||||||| ||||||||||| || || |||||||| || ||||| | | Sbjct 1853110 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAAAAACAGCGGAC 1853169 Query 36505 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || | |||||||| | |||| || || | | ||| || || || || ||||| Sbjct 1853170 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1853229 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-----TTGGTGTT 36619 || |||||||| |||| |||| | ||| |||| ||||| || ||| Sbjct 1853230 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1853289 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 | |||||||| || ||||||||| || ||||| | ||||| |||||||| || Sbjct 1853290 A--TTATTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAA 1853347 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGAT 36708 |||| || || || ||||| | ||| || Sbjct 1853348 GCCTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172684819760