Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq8 89.7 5e-13 seq6 89.7 5e-13 >seq1 Length=3168126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| || || || || ||||| | |||| | || || |||||| Sbjct 2212495 TGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGCTGT 2212436 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||| ||||| ||||| |||||||| || || || ||||| ||| | || Sbjct 2212435 TTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCTT 2212377 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||| | | |||||| |||| || | |||||||| || Sbjct 2212376 CGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGT 2212317 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || ||||| || ||||| Sbjct 2212316 CAATGTCTTGACGAAGATCTGCAT 2212293 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| |||||| | || | | || || | ||| || ||| Sbjct 2212769 GTAGACTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2212710 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||||| |||||||| |||||||| || ||||| ||||| ||| | || | || Sbjct 2212709 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTC-CTGAATCTTCGCCTT 2212651 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | |||||| || ||||| || Sbjct 2212650 CACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGT 2212591 Query 139747 TTTTACGAATATTTGCAT 139764 |||||||| || ||||| Sbjct 2212590 CTTTACGAAAATCTGCAT 2212573 >seq8 Length=1768214 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||||||||| |||||||||||||| | |||| |||||||||||| || || Sbjct 404571 GTAGACTCTTTTTGGATGTTATAATCGCTGAGGGTGCGACCGTCTTCGAGCTGCTTTCCG 404630 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGC 139661 ||| | ||||| || ||||| ||||| || |||| Sbjct 404631 GCAAAAATCAGGCGCTGCTGGTCGGGTGGGATGC 404664 >seq6 Length=2225400 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | |||| |||||||||||| || || Sbjct 324192 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCC 324133 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| || ||||| || || || ||||| || ||||| ||| || || Sbjct 324132 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 324073 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||| | || | |||||| || |||||||| Sbjct 324072 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 324013 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 324012 TTCACGAAGATCTGCAT 323996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063913188800