Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 >seq3 Length=2984533 Score = 167 bits (184), Expect = 3e-36 Identities = 383/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| || ||||| ||||| || || || | |||||| | |||||| ||| Sbjct 1852811 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1852870 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | || ||||| || || || || || ||||| || || || ||||| ||||| Sbjct 1852871 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1852930 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGG-CA 42232 || |||||||| |||||||| || || || || | | ||| || ||| || | Sbjct 1852931 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCA-AACGTCGATCG 1852989 Query 42233 CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || ||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1852990 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1853049 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || | ||| ||||| ||| | | | || || || |||||||| | || Sbjct 1853050 GATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAG 1853109 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | || |||| || ||||||||||| || ||||||||||| || ||||| | | | Sbjct 1853110 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAAAAACAGCGGAC 1853169 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || | | |||||||| | |||| || || | | ||| ||||| || || ||||| Sbjct 1853170 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1853229 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGT---GTT 42526 || |||||||| |||| |||| | ||| |||| ||||| | | ||| Sbjct 1853230 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1853289 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | |||||||| || ||||||||| || ||||| | ||||| ||||||||| || Sbjct 1853290 A--TTATTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAA 1853347 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGAT 42615 || | || || || ||||| | ||| || Sbjct 1853348 GCCTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Score = 156 bits (172), Expect = 6e-33 Identities = 376/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| ||| |||||||| ||| |||| ||||| || | ||| || | ||| ||||| Sbjct 1855157 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1855098 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1855097 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1855038 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || ||||| || || || || || || ||||| | | || ||| || | || | Sbjct 1855037 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1854978 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || ||||| | | ||||| || |||||| |||| ||||| || || || || Sbjct 1854977 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1854918 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | |||| ||| || || | || ||| || || | || |||||||| | ||| Sbjct 1854917 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1854858 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1854857 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1854798 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | |||| || || | | || || ||| | | || ||||| || || || ||| Sbjct 1854797 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCA 1854738 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---- 42528 ||| ||||||||||| | ||||| | ||| | || | | ||||| Sbjct 1854737 GAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1854679 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 |||||||| || | || |||||| || | || | |||||| | ||||| || || || Sbjct 1854678 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1854619 Query 42589 TTCTGCCTTTTTATACATATTCCAGAT 42615 ||| || || || ||||| | |||||| Sbjct 1854618 TTCAGCTTTCTTGTACATTTGCCAGAT 1854592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139082550640