Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 134 3e-26 seq3 118 2e-21 seq1 111 4e-19 >seq6 Length=2225400 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| |||||||| || || | |||||| || || || || || |||||| Sbjct 324972 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAA 324913 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 324912 ATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 324853 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || |||||||| || || || || ||| Sbjct 324852 TCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCCGTGAGGGTCTTGACA 324793 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 324792 AAGATCTGCATT 324781 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| || |||||||| || || || | ||||| || || Sbjct 323914 AGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 323855 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || ||||| | | ||| || || || || ||||| || || ||||||||| Sbjct 323854 TGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATC 323795 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | ||| || || || ||||| || || || ||||| ||| Sbjct 323794 TTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 323735 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 323734 GTGAGGGTCTTCACGAAGATCTGCAT 323709 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| ||||| ||||| || ||||| | || || || ||| Sbjct 324711 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 324652 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || ||||| || | ||| || ||||| || || || || || ||||||||| Sbjct 324651 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 324592 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || || || | || || | || ||||| || || || ||||| || Sbjct 324591 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCG 324532 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 324531 GTCAGGGTCTTGACGAAGATCTGCAT 324506 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | |||||||| || || || || Sbjct 324192 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCC 324133 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || || || || || ||||| ||||| || || Sbjct 324132 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 324073 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| ||||| | || Sbjct 324072 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 324013 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 324012 TTCACGAAGATCTGCAT 323996 >seq3 Length=2984533 Score = 118 bits (130), Expect = 2e-21 Identities = 299/447 (67%), Gaps = 17/447 (4%) Strand=Plus/Plus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || ||||||||||| | |||||||||||| ||||| || || || ||| |||| Sbjct 1854718 CTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1854777 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 | ||||| ||| |||| || | || || ||||| ||||| || || |||||| Sbjct 1854778 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1854837 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGA---TAA-CAACGA 269031 || || |||| ||| || | || |||||||| || | || ||| ||||| Sbjct 1854838 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1854897 Query 269032 AAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAAT 269090 | | || ||| | || | |||| | || |||||| | || || | || | Sbjct 1854898 GAGTAC----CTTTTTGATGCTGTTGAGACC-ATTCCCTGTGTCAAAAGGAAGGCGGACT 1854952 Query 269091 GGGCTCTGAAATGGATAAACGATAG-CGCGCC----TTACGGAGAAAGGTTAGTTGCTTT 269145 |||| || ||||| |||| | ||| || || | ||| | ||||| || || Sbjct 1854953 GGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGA--TTAGTCGCCTT 1855010 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 |||||||| || || || ||||| || || ||||| ||| | ||||| ||||||||||| Sbjct 1855011 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1855070 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 | ||||| ||||| ||| | || ||||| || ||| | || || | ||||| || | Sbjct 1855071 GCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAAT 1855130 Query 269266 ACACTGCGACTTCGCTTGTTTATTATT 269292 || ||||||||| || || || || Sbjct 1855131 GCATACCGACTTCGCATGCTTGTTGTT 1855157 >seq1 Length=3168126 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| || ||||| ||||| || ||||| || || | || || || || Sbjct 2212498 AGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGC 2212439 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 ||||| ||||| || || || | ||| || || ||||| || || || || ||||||||| Sbjct 2212438 TGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATC 2212379 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || ||||| || | || || || || || || || || || ||||| || Sbjct 2212378 TTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCC 2212319 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||| || || || |||||||| Sbjct 2212318 GTCAATGTCTTGACGAAGATCTGCAT 2212293 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| || || || || || ||||||| || || || | || |||||| Sbjct 2212769 GTAGACTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2212710 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || || || ||||| || ||||| || ||||||||||| || || Sbjct 2212709 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2212650 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || ||||| || || || ||||| || || | || Sbjct 2212649 ACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTC 2212590 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 2212589 TTTACGAAAATCTGCAT 2212573 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || || || || || || | |||||| || | ||| || || |||||| Sbjct 2213276 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2213217 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || || || || || ||||| || || |||||||| || || ||||| Sbjct 2213216 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2213157 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || |||||||| | || || ||||| || || || || || || Sbjct 2213156 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCTGTGAGGGTCTTGACG 2213097 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2213096 AAGATCTGCAT 2213086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398193467912