Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9 104 2e-17 seq6 93.3 3e-14 seq1 89.7 3e-13 >seq9 Length=1635283 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1310325 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1310266 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1310265 GCCAATATTTAGCTTTA 1310249 >seq6 Length=2225400 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 38108 CACCAAA-TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| ||||| ||||||||||| || |||||||| ||||||| || |||| | Sbjct 324992 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 324933 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | | || || || ||||| || ||||| || || |||| || | ||||| |||||| Sbjct 324932 CGAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 324873 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| || ||| ||||| | || || || | || || || | || || || | Sbjct 324872 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCT 324813 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | ||| || || || |||||||| Sbjct 324812 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 324782 >seq1 Length=3168126 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 38109 ACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| |||||| || |||||| || |||||||||||||| | || | || || Sbjct 2212502 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2212443 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||||| || || || || || || || || |||| |||| || || |||||| Sbjct 2212442 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2212383 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | || ||| || | || ||||| | || || || || Sbjct 2212382 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2212323 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| || || ||||| ||||||||| Sbjct 2212322 GCCCGTCAATGTCTTGACGAAGATCTGCATG 2212292 Score = 86.0 bits (94), Expect = 4e-12 Identities = 175/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| |||| || || || ||||| || |||||||| || ||||||| | || || || Sbjct 3144876 AAGATCGAAGGCAAAGGCAACGGCATCAAAACCGTGATCCCCAACATGTCCGACGTAGCG 3144817 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || || ||||| ||||||||||||| |||| ||||| | || || || || Sbjct 3144816 CGCGCACTTTCCCGCCCGCCCACCTACCCGACCAAATTCTTCGGCTCTGAGCTCGGTGCG 3144757 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| | || | || ||||| || | |||||| || || |||| | | ||| Sbjct 3144756 CAGACGACCGTCGACGAGAAGAACGACCGTTACATCGTCAATGGCGCGCACGATGCCGCC 3144697 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 || | || | || || | || || |||||| |||||||| | | ||| | Sbjct 3144696 CGCCTCCGCGAGCTCCTCGATGCGTTCATCGACAAGTTCGTGCTGTGCGGCGCGTGCAAG 3144637 Query 6474 AACCCGGAGACCGAGCTTAT 6493 ||||||||||| || || || Sbjct 3144636 AACCCGGAGACGGACCTCAT 3144617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947142849634