Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq1 109 5e-19 >seq6 Length=2225400 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| |||| || ||||||||| Sbjct 324506 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 324565 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| ||||| | ||| ||||| || || || || |||||||| Sbjct 324566 GACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACCA 324624 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| |||||||| ||| | || |||| |||||| | || ||||| Sbjct 324625 GCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 324684 Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202 ||| || || || || || || ||| Sbjct 324685 TATCCAGAAGGAGTCGACTCTTCAT 324709 Score = 105 bits (116), Expect = 6e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || ||||| | ||||| |||| || ||||| || Sbjct 324781 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTCGAGGTCGAGTCTTC 324840 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || | || || | ||| ||||| ||||||||||| || || Sbjct 324841 GGACACGATCGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAAGGGATTCCTCCCGA 324897 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | |||||||| ||||| || | || || | |||||| || || || Sbjct 324898 CCAGCAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTA 324957 Query 25175 CAATATTCAAAAAGA 25189 |||||| || || || Sbjct 324958 CAATATCCAGAAGGA 324972 >seq1 Length=3168126 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| ||||| || || | ||||| |||| || ||||| || Sbjct 2212573 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2212632 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || ||||| | || | ||| ||||| ||||||||||| || ||||| Sbjct 2212633 GACACTATTGACAACGTGAAGGCGAAGATTCAG-GACAAGGAAGGGATTCCTCCCGACCA 2212691 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | || || || || || || || || |||| || ||| | ||||||||| Sbjct 2212692 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2212751 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 2212752 CATCCAGAAAGAGTCTACTCTGCA 2212775 Score = 104 bits (114), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | ||||||||||| || Sbjct 2212293 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2212352 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | || || | ||| ||||| || || || || || ||| Sbjct 2212353 GACACTATCGA--CAATGTCAAGGCGAAGATTCA-GGACAAGGAGGGTATCCCTCCCGAC 2212409 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| || || || ||||| | || |||| ||||| | |||||| Sbjct 2212410 CAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTAC 2212469 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 ||||| || || || || || || ||| Sbjct 2212470 AATATCCAGAAGGAGTCTACCCTTCAT 2212496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327926063410