Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 >seq3 Length=2984533 Score = 187 bits (206), Expect = 3e-42 Identities = 381/563 (68%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || || || | |||||||| || |||| || || || |||||| Sbjct 1852820 CAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1852879 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || ||||||||||| ||||| || |||||||||||| || || || || Sbjct 1852880 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1852939 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270 || ||||| || ||||| || ||||| | | |||||| | | || || | Sbjct 1852940 ATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCG----ATCGTTGATC 1852995 Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 |||||| | | ||||| |||| || | ||| | || |||| || ||||| | Sbjct 1852996 AGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGA 1853055 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || ||| | || |||| | || || ||||| |||||||| | ||||| || Sbjct 1853056 ATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTA 1853115 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||| || || | || ||||| || || ||||| || ||||| | |||| | Sbjct 1853116 TGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAAAAACAGCGGACTTCAGC 1853175 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | || ||||| ||||| | ||| || ||||| || ||||| ||||| ||||| || Sbjct 1853176 GGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGC 1853235 Query 93508 TGCaaaaaaaGCCA--ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC- 93564 |||||||| |||| | ||||| | || ||||| || | ||| || || |||| Sbjct 1853236 GGCAAAAAATGCCAGGACATATGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATTA 1853293 Query 93565 --CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 ||| ||| | | |||||| || | ||||| |||||| ||||||||||| || | Sbjct 1853294 TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGG 1853353 Query 93623 GCTTTTTTGTACATATCCCATAT 93645 ||||| |||||||| | ||| || Sbjct 1853354 GCTTTCTTGTACATCTGCCAAAT 1853376 Score = 179 bits (198), Expect = 4e-40 Identities = 381/568 (67%), Gaps = 3/568 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 || ||| ||||| || ||||||||||| | || ||||| || || | |||||| Sbjct 1855159 TGAACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1855100 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 ||| || | || || | || || || ||||| | ||| || ||||| || ||| || Sbjct 1855099 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1855040 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || ||||| || || || || || | || || ||||| | | | Sbjct 1855039 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGC 1854980 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | |||||| || ||||| || || || | || | ||| || | || | Sbjct 1854979 GACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCT 1854920 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | | ||| | ||| ||||| || || | | | || ||||| |||||||| | | Sbjct 1854919 CAACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAA 1854860 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || || | || |||| ||| ||||| ||||||||| |||||||| || | | Sbjct 1854859 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1854800 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | ||| || || | || || | ||| || || || || ||||| ||||||| Sbjct 1854799 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCAT 1854740 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC- 93559 | || || |||||||| || | | |||| | ||| || ||||| || ||||| Sbjct 1854739 CAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1854680 Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 |||| ||| ||| ||||||||||| || || | ||||||| | ||||| || || | Sbjct 1854679 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1854620 Query 93618 CTTCTGCTTTTTTGTACATATCCCATAT 93645 |||| ||||| |||||||| | ||| || Sbjct 1854619 CTTCAGCTTTCTTGTACATTTGCCAGAT 1854592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860702549360