Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq6 86.0 5e-12 >seq1 Length=3168126 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||||||||| | | Sbjct 2212293 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2212352 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| |||||||||||||| || ||||| || Sbjct 2212353 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2212412 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || |||||| | |||||| ||||| | || |||||||| Sbjct 2212413 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAAT 2212472 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | ||| Sbjct 2212473 ATCCAGAAGGAGTCTACCCTTCAT 2212496 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || ||| ||||||| || || || | | Sbjct 2212573 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2212632 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||| || ||||| ||||| || Sbjct 2212633 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2212692 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||||| |||||| || || |||||||||||||| Sbjct 2212693 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAC 2212752 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 2212753 ATCCAGAAAGAGTCTAC 2212769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| || || || || || || ||||| || || ||||| ||||| Sbjct 2213170 AAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAACGCCTGATTTTTGCGGGCAAG 2213229 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || ||||| ||||| | || |||||||||||||| ||||| |||| | ||| Sbjct 2213230 CAATTGGAGGACGGTCGCACACTTTCGGATTACAACATTCAGAAAGAGAGCACCCTCCAT 2213289 >seq6 Length=2225400 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 || || | ||||| || || || || || | || || || ||| |||| || || |||| Sbjct 323701 TTATAGACATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGG 323760 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | || ||| | || | |||| || ||||| ||||||||||| || || | Sbjct 323761 AGTCTTCGGACACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCC 323820 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 |||| || || ||| | || || || ||||| ||| | ||||| ||||||| | || | Sbjct 323821 CCGACCAGCAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGG 323880 Query 22391 ATTACAACATTCAAAAAGAATCCAC 22415 | || ||||| || || || || || Sbjct 323881 ACTATAACATCCAGAAGGAGTCGAC 323905 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || ||| | || || || || || | | Sbjct 324278 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 324337 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || |||||||| |||||||| ||||| || || || Sbjct 324338 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 324397 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | ||||| |||||| ||||||| || ||| Sbjct 324398 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAAC 324457 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||| | || | || | || ||||| Sbjct 324458 ATCCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGTCTACGTGGAGG 324504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727928383910