Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 seq2 93.3 9e-14 seq3 87.8 4e-12 >seq6 Length=2225400 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||||| |||||| | |||||||| | | ||||| Sbjct 631676 TCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGTTGTTCAAGGCCGA 631617 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 |||| |||| || ||||| || |||||| ||||| |||||| |||||||| | Sbjct 631616 CATCCTGTTGCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTTGCCTGGCTGGA 631557 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 | |||| | ||| | || | | | ||| |||| ||||| |||||||| ||||| Sbjct 631556 GAACTACTTGACCGGCCTTACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTT 631497 Query 279884 CCT 279886 ||| Sbjct 631496 CCT 631494 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| | || ||||| ||| | || ||||| || || ||||| | || |||| |||| Sbjct 631205 TGTCCTCGGCCCCAACGGTTCCGGAAAGTCGACGCTCGTCAAATTGCTCACTGCGGAGAT 631146 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 || | | |||| || | | |||||||| |||||| || || | || || || Sbjct 631145 GGAGCCGAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGCTATGTTGC 631086 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||||||||| ||||| || |||| ||| || | | ||||| | Sbjct 631085 CCAGCACGCCTTCCACCACATCGATAACCATCTCGACAAGACGCCCCTCGAGTACATGCT 631026 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 631025 GTGGCGTTA 631017 >seq2 Length=2792455 Score = 93.3 bits (102), Expect = 9e-14 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| |||| || ||||| | || || || || || |||| | || |||||||||| Sbjct 439009 TGTCCTTGGCCCTAATGGCTCCGGCAAATCCACGCTCGTCAAGTTGCTCACTGGCGAGAT 439068 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 |||||| |||| || | | |||||||| || ||| || || | || ||||| Sbjct 439069 GGAGGCCAACAAGGGTGGTGAGGTGTGGAAGCACCCAAACTTGGTCATCGGCTATGTCGC 439128 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 || ||||||||||||||||| || ||||||| |||| ||| ||| | ||||| | Sbjct 439129 CCAACACGCTTTCCACCACATTGATCACCACCTCGACAAGACGCCTTTGGAGTACATGCT 439188 Query 280349 GTGGCGCTATGCAAGTGGGC-AGGATCTGGA 280378 ||||| || || |||| |||||||||| Sbjct 439189 CTGGCGGTA-CCAGACGGGCGAGGATCTGGA 439218 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || || ||||||||||||||||| || ||| |||| || || || | || || Sbjct 438538 TCTTTCCGGCGGTTGGAAGATGAAGCTCGCTCTCGCTCGTGCGATGCTCTTCAAGGCTGA 438597 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | |||| |||| |||||||| || ||||| |||| | |||||| |||||||| | Sbjct 438598 TATCCTCTTGCTCGATGAGCCGACTAACCATTTGGATGTCGTCAACGTTGCCTGGCTCGA 438657 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 ||||| || | || | | |||| |||| ||||| ||||||||||| || Sbjct 438658 AAATTACCTCACTGGCCTCACCCACTGCACTTCGATCATCGTCTCGCACGACTCTGGGTT 438717 Query 279884 CCT 279886 ||| Sbjct 438718 CCT 438720 >seq3 Length=2984533 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || ||||| || || ||||| || | ||| |||| || ||||| | ||||| Sbjct 1855486 TAATCCGATACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAAGGAGATCATGTCCATA 1855427 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCA---AGTGCTACGAAGATG 251661 ||||||||||||||||| || ||||| ||||| | |||| || || | || | Sbjct 1855426 AAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTT---TTCGCCACCGAGGGCAATGAGCAGA 1855370 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 || ||||| |||||||| | ||||| | ||| || | | ||||||||||||| Sbjct 1855369 CGATCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCAATCA 1855315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836615631774