Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 seq5 87.8 3e-12 >seq3 Length=2984533 Score = 170 bits (188), Expect = 4e-37 Identities = 318/462 (69%), Gaps = 19/462 (4%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || || || || |||||||| || || ||||| |||||||| | | ||| | Sbjct 1854718 CTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1854777 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| ||||||||| ||||||||||| ||||| || || || || Sbjct 1854778 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1854837 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC----CGTCGA 42598 | ||| ||| ||| || || || | || |||||| ||| || | || Sbjct 1854838 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1854897 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | ||| | | || | || | ||||| || ||||| |||| | |||||||||||| Sbjct 1854898 GAGTACC----TTTTTGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGACTG 1854953 Query 42659 GGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||| || ||||||| || ||| | | || || | ||| | | || ||||| Sbjct 1854954 GGCACTACGCTGGATCTCCGATCGTCGCTCCACA---TTTGCTGAGCGATTAGTCGCCTT 1855010 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 |||| || |||||||| |||||||| || | |||||||| ||||||||| | ||| | Sbjct 1855011 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1855070 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 1855071 GCGTGGCCTC-ATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1855129 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 |||||| ||||| || ||| | ||||| ||||| |||| Sbjct 1855130 TGCATACCGACTTCGCATGCTTGTTGTTC---AGCCATCTCA 1855168 Score = 141 bits (156), Expect = 2e-28 Identities = 374/561 (67%), Gaps = 9/561 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || ||| || ||||| |||| ||||| || || |||| || Sbjct 1853367 ATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATGTCCAAAGAT 1853308 Query 42369 ACGGCCGGCTGGGAG--TCAC-TGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | || |||| | | || || ||| |||||| |||| | | | | ||| Sbjct 1853307 ATCTTCGACTGGAATAATAACCTGAATGATAACGAACGCCATTTCATATCATATGTCCTG 1853248 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || || || ||||| || ||||| || ||||| ||||| |||| |||| || Sbjct 1853247 GCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGGTTTTCGAGC 1853188 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || || | ||| | ||||| || || || || ||||| || || ||| | Sbjct 1853187 GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAGATCATGATGGAAAACATT 1853128 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC-CTGGATCCCGTCGAGCGTAA 42604 ||||| || ||| | || || | || ||||| ||| || | | ||||| | Sbjct 1853127 CACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTCAGC-AGCGTGA 1853069 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | || ||||| | || ||||| || || ||| ||||| ||||| | || ||||| || Sbjct 1853068 CTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACCGAGTGGGCCCT 1853009 Query 42665 CAACTGGATCGAGAGTCC-CGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || ||| | ||||| | | |||| |||| || || | || | Sbjct 1853008 CAGGTGGATCTCTGATCAACGAT-CGACGTTTGCCACGAGGTTGGTGGCGTTCGCAGCGG 1852950 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTG 42782 | || || ||||||||||| || | || || || ||||||||||| ||| | |||| Sbjct 1852949 TAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGAAGAAACGAGGTC 1852890 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || | ||||| || |||||||| || || ||||||| ||| |||| | Sbjct 1852889 TC-ATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAGGGATGCACACA 1852831 Query 42843 GACTTTGCCTGCCTCCTGTTC 42863 || |||||||| ||| ||||| Sbjct 1852830 GATTTTGCCTGTCTCTTGTTC 1852810 >seq5 Length=2172826 Score = 87.8 bits (96), Expect = 3e-12 Identities = 194/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||| | |||||| |||| || || | | | |||||||| ||||| || ||| Sbjct 492878 CCCCAAAGGTCAAATTGCAACAAGCCTTCGGATGCAGGGCTGCCAGAGTAGGACGAGTAC 492819 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 || || || || |||| || | || | || | ||||| | ||| ||||||||| Sbjct 492818 GGGCCATCTTTCTCAGCCATCTCAACACTAGCTTCCACAGCGGCATGGTATATGGTCTCG 492759 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATG 244477 |||||| || |||| | ||| |||| | | || || |||| || |||||| Sbjct 492758 AAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGATCATG 492699 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 || || || || || |||||||||| || || || | ||| ||| |||||||| Sbjct 492698 AAAGTATCCGCAAGACCTTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGAGTTG 492639 Query 244538 ATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 | || || || |||||||| ||||| | || || | ||| |||||| Sbjct 492638 CTTGCCTCAGGAACGGGGTAGTAGTTGACATCAATGATACGGTTTAGGTTG 492588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339034740640