Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-28 seq1 123 6e-23 seq9 98.7 2e-15 >seq6 Length=2225400 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || |||||||| ||||| | || |||||||| || || | Sbjct 324713 CGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGA 324654 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 ||| || || ||||| || || ||||| || | ||||| || || || ||||| | Sbjct 324653 GTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAA 324594 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || |||||||| || || | || ||| || || ||||||||||||||||| | Sbjct 324593 TCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGC 324534 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||||||||| |||||||| Sbjct 324533 CGGTCAGGGTCTTGACGAAGATCTGCAT 324506 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| |||||||| | ||| || || ||||| ||||||| Sbjct 324508 CATG-CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGT 324450 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| ||||| || | || || || |||||||||| ||||| || | Sbjct 324449 CGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGG---T 324393 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || ||||| || || ||||| |||||||| || || | || | Sbjct 324392 CCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAG 324333 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||| |||||||| || || || ||||||||||| || ||||| Sbjct 324332 ACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 324278 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || ||||| |||||||| | || ||||| ||||| || | Sbjct 323916 CGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGA 323857 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || || || ||||| |||| |||||| || |||||||| || || ||||| | Sbjct 323856 GCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAA 323797 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | ||||| || ||||| || || | || || || || ||||| ||||||||||||| Sbjct 323796 TCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCC 323737 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| |||||||| Sbjct 323736 CAGTGAGGGTCTTCACGAAGATCTGCAT 323709 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | || ||||| |||||||| | || || || |||||| Sbjct 324186 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 324127 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || | ||||| || || || |||||||| || || || ||||| Sbjct 324126 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 324067 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||||||||||||||| || |||| ||||| ||| Sbjct 324066 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 324007 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 324006 AAGATCTGCAT 323996 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || |||| ||||| || || |||||||| ||||| | || ||||| ||||| || | Sbjct 324987 AGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGC 324928 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || || ||||| || || || ||||| || ||||| || Sbjct 324927 TGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 324868 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| || || || || || | || || || || ||||||||||| ||||| || Sbjct 324867 TTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCC 324808 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || |||||||| || ||||||||| Sbjct 324807 GTGAGGGTCTTGACAAAGATCTGCATT 324781 >seq1 Length=3168126 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || |||| ||| || || || || || || || ||||| |||||| Sbjct 2212763 TCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2212704 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2212703 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2212644 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || ||||| |||||||||||||| |||| ||||| ||| Sbjct 2212643 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCTTTACG 2212584 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2212583 AAAATCTGCAT 2212573 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || | |||||||| || || || | ||||| || |||||| Sbjct 2212483 TCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2212424 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || || ||||| || ||||| || || || Sbjct 2212423 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2212364 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || ||||| || ||||| ||||| || |||| ||||||||| Sbjct 2212363 TCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGACG 2212304 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2212303 AAGATCTGCAT 2212293 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||| | ||||| ||||| || || || || || | || ||||| ||||| || ||| Sbjct 2213291 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2213232 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || ||||| || || || ||||| ||||| || || || || Sbjct 2213231 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2213172 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| ||||| || || || | || || ||||| || | |||||||||||| || Sbjct 2213171 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCT 2213112 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| Sbjct 2213111 GTGAGGGTCTTGACGAAGATCTGCAT 2213086 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || |||| || || || ||||| || ||||||| Sbjct 2213084 CCGCCGCGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2213025 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || || || ||||||||| |||| Sbjct 2213024 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2212965 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| |||||||| || || || || | ||| ||| || || Sbjct 2212964 ATGCCCTCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACC 2212905 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || ||||| || || || || |||||||| Sbjct 2212904 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2212858 >seq9 Length=1635283 Score = 98.7 bits (108), Expect = 2e-15 Identities = 198/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 326078 TCGGTCATGATCATCACATGACCGTAACG-AAGCGAG-GACGTGTCTTTGTACACTTTAC 326135 || ||||| ||||||| || ||||| || || | | ||||| || | ||| |||| Sbjct 1372997 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGACGT-TCGTA-TACTCTTTGT 1373054 Query 326136 CGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTT 326194 | | || ||||| | ||| | |||| | ||| |||||||||||||||| |||| || Sbjct 1373055 TGCTCTGGAGGCCCATAATCTTCTTGATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTG 1373112 Query 326195 GCCACGGAT-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 326253 | || | | || ||||| ||||| | | ||| || ||||| ||||| |||||| | | Sbjct 1373113 GTCATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTT 1373172 Query 326254 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 326313 ||||| ||||| || || ||| || | ||||| | || ||||| || || || Sbjct 1373173 GTCGCGCCCGACGACACCCAACCCCGCAACAGCAAGGGCTTTGGCAGAATCTCCTTCAGT 1373232 Query 326314 CAGAATGAGAGTGCACATTTTGCTG--TTATTCGTTCCAGC 326352 ||||||||||| |||||| | || || |||| ||||| Sbjct 1373233 GAGAATGAGAGT--ACATTTAGATGCATTCCTCGTCCCAGC 1373271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654188399492