Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq6 102 8e-17 seq5 82.4 7e-11 >seq1 Length=3168126 Score = 129 bits (142), Expect = 6e-25 Identities = 156/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 126905 ACCAA-ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| | |||||||| || || ||||||||||| | |||||| ||| || Sbjct 2212502 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2212443 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| |||||| |||| | |||||||| |||||||| || |||||||||||| Sbjct 2212442 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2212383 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||||| | |||| ||||||| | ||| ||||| | || | || || Sbjct 2212382 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2212323 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| |||| || || || || ||||||||| Sbjct 2212322 GCCCGTCAATGTCTTGACGAAGATCTGCATG 2212292 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || ||||||||| | || || ||| || | ||| |||||| Sbjct 2212769 GTAGACTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2212710 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| || ||||| |||||||| || || ||||||||| || ||| ||| Sbjct 2212709 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2212650 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | ||||||| | |||||| |||| || | ||| || || |||| || Sbjct 2212649 ACGTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGT 2212591 Query 127096 TTTTACAAAAATCTGCATG 127114 ||||| |||||||||||| Sbjct 2212590 CTTTACGAAAATCTGCATG 2212572 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | || || ||| || ||||| || || Sbjct 2213054 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCC 2212995 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | ||||| ||||| || || ||||||||||| ||| ||| ||| ||| Sbjct 2212994 GCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTG 2212935 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| || | ||| | || ||||| ||||| ||| Sbjct 2212934 ACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2212875 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 2212874 TTCACAAAGATCTGCAT 2212858 >seq6 Length=2225400 Score = 102 bits (112), Expect = 8e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| | ||||| |||||||| ||||| || || ||||||||| Sbjct 323863 TCCTCGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTG 323804 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || ||| ||||| | |||| |||||||| | ||| || |||| ||| | | Sbjct 323803 TCCTGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATC 323744 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || || || || || ||||||||| || Sbjct 323743 GTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTCT 323705 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 126906 CCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTA 126965 ||||||| | || ||||| || ||||| || || || | ||||| || || | Sbjct 324203 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 324144 Query 126966 GCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGA 127025 |||| || || ||| ||||||| |||||||| || || || ||||||||||||||| || Sbjct 324143 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 324084 Query 127026 TTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGC 127085 | || ||||| | |||| ||||| | ||| || |||| || | ||| || | Sbjct 324083 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 324024 Query 127086 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 | |||| || || || || ||||||||| || Sbjct 324023 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 323992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || | ||||| ||| || || || || || Sbjct 324702 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCG 324643 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| | || | |||||||| || || || || |||||||||||| ||| | | ||| || Sbjct 324642 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAATCTTTGCCTT 324584 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | ||||| ||| ||||| | |||||| |||| || | ||| ||||||||||| | Sbjct 324583 CACGTTGT-CGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGG 324525 Query 127095 TTTTTACAAAAATCTGCATGGCT 127117 | || || || ||||||||| || Sbjct 324524 TCTTGACGAAGATCTGCATGCCT 324502 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || || || ||| | ||||| || || ||||| || || Sbjct 324474 GTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCC 324415 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||| || || ||| ||| Sbjct 324414 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 324355 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | |||||| |||| || | ||| ||||| || || || Sbjct 324354 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 324295 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 324294 TTGACGAAAATTTGCAT 324278 >seq5 Length=2172826 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 147274 TAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGA 147333 ||||| || || ||| |||||| || ||||| |||||||||||| | || ||| ||| Sbjct 491696 TAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 491637 Query 147334 CGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTC 147390 || ||||| || || || || |||||| ||||| || | |||| | Sbjct 491636 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAA-GTAACGTTCAGA--C 491580 Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450 || | | || |||||||| |||| || ||| |||||||||| | | || ||| Sbjct 491579 ATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATACCGACAGCTACG 491520 Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCAC-GTCATTGA 147493 ||||||| ||||||||| || ||||| || | ||| | |||||| Sbjct 491519 CGCATGATCATGTGCTGTGGACGTTCTGCGA-CACGGCCATTGA 491477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500716787360