Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 147 2e-30 seq1 131 2e-25 >seq6 Length=2225400 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | || ||| | || |||||||| || |||||| ||||| || ||||||| Sbjct 324506 TGCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGTCGG 324447 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| | | Sbjct 324446 AGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGG 324387 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| || |||||| ||| | | | | |||||| || || | Sbjct 324386 GAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 324327 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||| || || |||||||| || || || || || |||||||| Sbjct 324326 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 324278 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || |||||||| | || ||||| |||||||||||||| Sbjct 324697 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAA 324638 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | | |||||||||| ||||| ||| | ||| Sbjct 324637 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCA-CGT 324579 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | |||||| || ||||| ||||| || || | Sbjct 324578 TGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGA 324519 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 324518 CGAAGATCTGCAT 324506 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| |||||||||||||| || || ||||| |||| |||||||||||||| Sbjct 324978 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 324919 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | |||||||||||||| || | | ||||||||| |||||| |||| Sbjct 324918 GCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTG 324859 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || || || || | |||||| || || ||||| || || Sbjct 324858 ACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCCGTGAGGGTC 324799 Query 46577 TTAACAAAGATTTGCATT 46594 || |||||||| |||||| Sbjct 324798 TTGACAAAGATCTGCATT 324781 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || || ||||| || || ||||| |||| |||||||||||||| ||||| Sbjct 324187 CTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAA 324128 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 324127 GATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 324068 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | |||||| || || || |||| ||| || || Sbjct 324067 ATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCAC 324008 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 324007 GAAGATCTGCAT 323996 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| || || ||||| |||| |||||||||||||| ||||| Sbjct 323900 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 323841 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||||| || | | |||||||||| |||||| ||||| | Sbjct 323840 AATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTGACGTT 323781 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | ||||| || || || || || || || || Sbjct 323780 ATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCAC 323721 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 323720 GAAGATCTGCAT 323709 >seq1 Length=3168126 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || | || |||||||||||||| || || Sbjct 2213049 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAA 2212990 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||| || || | || | || |||||| ||| ||||||| |||| | Sbjct 2212989 AATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACATT 2212930 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || |||| |||||||| ||||| ||||| ||||| || Sbjct 2212929 ATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 2212870 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 2212869 AAAGATCTGCAT 2212858 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | ||| |||||| ||||||||||| || || || |||||| | || || ||| Sbjct 2212498 AGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGC 2212439 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 || || || ||||| || | ||||||||||||| || | | |||||||||| ||| Sbjct 2212438 TGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATC 2212379 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 ||| ||||| | | | ||||| || ||||| || | |||||||| |||||| Sbjct 2212378 TTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCC 2212319 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || ||||| ||||| Sbjct 2212318 GTCAATGTCTTGACGAAGATCTGCAT 2212293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238301083280